Variant report

Variant	rs7623348
Chromosome Location	chr3:24130263-24130264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24040156..24041043-chr3:24129982..24130913,4	MCF-7	breast:
2	chr3:24130002..24130976-chr3:24279368..24280094,2	MCF-7	breast:
3	chr3:24129965..24130904-chr3:24724999..24725940,3	K562	blood:
4	chr3:24130092..24131026-chr3:24190066..24191111,7	MCF-7	breast:
5	chr3:24129982..24130887-chr3:24190297..24191204,3	K562	blood:
6	chr3:24040089..24040604-chr3:24130148..24130919,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11129139	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12490512	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12491272	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12492765	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12498129	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4416338	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55920816	0.89[EUR][1000 genomes]
rs57144868	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57903454	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58523227	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59374114	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59461522	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59715267	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59911620	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60635484	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60706278	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253424	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62253427	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62255803	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255804	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769284	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769403	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6807599	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73134512	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7428009	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7636932	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs826371	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826372	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826373	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs826374	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826375	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24128800-24130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links