Variant report

Variant	rs73134512
Chromosome Location	chr3:24089762-24089763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11129139	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12490512	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491272	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12492765	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12498129	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014085	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2221826	0.81[EUR][1000 genomes]
rs4416338	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4505633	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858576	0.84[EUR][1000 genomes]
rs55920816	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57144868	0.84[EUR][1000 genomes]
rs57903454	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58523227	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59374114	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59461522	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59715267	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59911620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60056719	0.84[EUR][1000 genomes]
rs60635484	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60706278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61287579	0.81[AFR][1000 genomes]
rs61544225	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253420	0.81[EUR][1000 genomes]
rs62253424	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62253427	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255803	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62255804	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6769284	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6769403	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6807599	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7428009	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7623348	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7636932	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs826371	0.84[EUR][1000 genomes]
rs826372	0.84[EUR][1000 genomes]
rs826373	0.86[EUR][1000 genomes]
rs826374	0.84[EUR][1000 genomes]
rs826375	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
4	chr3:24088600-24090600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24088600-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:24088800-24089800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:24088800-24089800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:24088800-24090000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:24088800-24090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:24088800-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:24088800-24090600	Enhancers	Colon Smooth Muscle	Colon
13	chr3:24088800-24090600	Enhancers	Hela-S3	cervix
14	chr3:24088800-24090600	Enhancers	NHEK	skin
15	chr3:24088800-24090600	Enhancers	Osteobl	bone
16	chr3:24088800-24090800	Enhancers	Adipose Nuclei	Adipose
17	chr3:24088800-24090800	Enhancers	Placenta	Placenta
18	chr3:24088800-24090800	Enhancers	Ovary	ovary
19	chr3:24088800-24090800	Enhancers	HMEC	breast
20	chr3:24088800-24090800	Enhancers	NHLF	lung
21	chr3:24088800-24091400	Enhancers	HSMMtube	muscle
22	chr3:24089000-24089800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:24089000-24089800	Enhancers	Psoas Muscle	Psoas
24	chr3:24089000-24089800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:24089000-24089800	Enhancers	A549	lung
26	chr3:24089000-24089800	Enhancers	HSMM	muscle
27	chr3:24089000-24090000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr3:24089000-24090600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:24089000-24090600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:24089000-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:24089000-24090600	Enhancers	Aorta	Aorta
32	chr3:24089200-24089800	Enhancers	HUVEC	blood vessel
33	chr3:24089200-24089800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr3:24089200-24090400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr3:24089200-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:24089200-24090600	Enhancers	Rectal Smooth Muscle	rectum
37	chr3:24089400-24090600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:24089600-24090000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:24089600-24090000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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