Variant report

Variant	rs17014085
Chromosome Location	chr3:24088171-24088172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24086798..24089297-chr3:24089834..24092711,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12490512	0.81[EUR][1000 genomes]
rs12492765	0.80[EUR][1000 genomes]
rs13095392	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2221826	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4416338	0.80[EUR][1000 genomes]
rs4589882	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4858095	0.81[CHB][hapmap]
rs4858576	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57903454	0.81[EUR][1000 genomes]
rs58523227	0.86[AFR][1000 genomes]
rs59374114	0.81[EUR][1000 genomes]
rs59461522	0.81[EUR][1000 genomes]
rs59715267	0.81[EUR][1000 genomes]
rs59911620	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60056719	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635484	0.81[EUR][1000 genomes]
rs60706278	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62253420	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253424	0.80[EUR][1000 genomes]
rs62253427	0.81[EUR][1000 genomes]
rs6550823	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6550829	0.86[CHB][hapmap]
rs6769403	0.83[TSI][hapmap]
rs6807599	0.85[TSI][hapmap]
rs73134512	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7428009	0.82[GIH][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs7636932	0.81[EUR][1000 genomes]
rs826374	0.83[TSI][hapmap]
rs826375	0.83[TSI][hapmap]
rs9847444	0.83[EUR][1000 genomes]
rs9864762	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24079800-24088200	Weak transcription	Spleen	Spleen
3	chr3:24083400-24089000	Weak transcription	Psoas Muscle	Psoas
4	chr3:24084600-24088600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:24084600-24088800	Weak transcription	HSMMtube	muscle
6	chr3:24084600-24089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:24084600-24089400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:24084800-24088600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:24084800-24088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:24084800-24088800	Weak transcription	NHLF	lung
11	chr3:24085000-24088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:24085000-24088600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:24085000-24088800	Weak transcription	Ovary	ovary
14	chr3:24085000-24089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:24085200-24088800	Weak transcription	Adipose Nuclei	Adipose
18	chr3:24085200-24089200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:24086200-24088800	Weak transcription	Placenta	Placenta
20	chr3:24087000-24088800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:24087800-24088200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:24087800-24089200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:24088000-24088400	Weak transcription	NHDF-Ad	bronchial
24	chr3:24088000-24089000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links