Variant report

Variant	rs9864762
Chromosome Location	chr3:24079743-24079744
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13095392	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs17014085	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221826	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4241517	0.86[CHB][hapmap]
rs4321479	0.86[CHB][hapmap]
rs4589882	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4858095	0.91[CHB][hapmap]
rs4858098	0.87[CHB][hapmap]
rs4858567	0.86[CHB][hapmap]
rs4858576	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5023610	0.87[CHB][hapmap]
rs60056719	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62253420	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6550823	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs6550829	0.87[CHB][hapmap]
rs6550833	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6794922	0.86[CHB][hapmap]
rs7636810	0.82[CHB][hapmap]
rs9847444	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079200-24079800	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:24079400-24079800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:24079400-24079800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:24079400-24079800	Enhancers	Spleen	Spleen
5	chr3:24079400-24080400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:24079400-24081000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:24079400-24081000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24079400-24084200	Weak transcription	Right Atrium	heart
9	chr3:24079600-24079800	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:24079600-24082600	Weak transcription	Psoas Muscle	Psoas
11	chr3:24079600-24082800	Weak transcription	Ovary	ovary
12	chr3:24079600-24084800	Weak transcription	Left Ventricle	heart
13	chr3:24079600-24090400	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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