Variant report

Variant	rs7625200
Chromosome Location	chr3:179559022-179559023
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179553606..179556347-chr3:179556910..179559771,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12106676	0.80[AMR][1000 genomes]
rs12486746	0.80[AMR][1000 genomes]
rs12486844	0.80[AMR][1000 genomes]
rs28633078	0.80[AMR][1000 genomes]
rs28682295	0.80[AMR][1000 genomes]
rs7625095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641713	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179537800-179599400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179552000-179560200	Strong transcription	Dnd41	blood
4	chr3:179553200-179571000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:179553400-179560800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:179553600-179576200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:179554000-179590400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:179554400-179570800	Weak transcription	Brain Angular Gyrus	brain
9	chr3:179558400-179559200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:179558400-179559400	Enhancers	NH-A	brain
11	chr3:179558400-179560200	Enhancers	HMEC	breast
12	chr3:179558600-179559200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:179558600-179559200	Enhancers	Fetal Heart	heart
14	chr3:179558600-179559600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:179558800-179559200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:179558800-179559200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:179558800-179559200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:179558800-179559200	Enhancers	Hela-S3	cervix
19	chr3:179558800-179559200	Enhancers	Osteobl	bone
20	chr3:179558800-179559800	Enhancers	NHEK	skin
21	chr3:179558800-179560000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:179559000-179559200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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