Variant report

Variant	rs7641713
Chromosome Location	chr3:179677104-179677105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7625095	1.00[EUR][1000 genomes]
rs7625200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7641713	CD9	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
2	chr3:179672200-179679600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:179674600-179677400	Flanking Active TSS	Dnd41	blood
4	chr3:179675200-179679800	Enhancers	Fetal Thymus	thymus
5	chr3:179675800-179679000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:179675800-179688000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:179676200-179677600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:179676200-179677800	Weak transcription	Thymus	Thymus
9	chr3:179676400-179677400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:179676400-179677800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:179676400-179678200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:179676600-179677800	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:179676600-179678200	Weak transcription	Brain Angular Gyrus	brain
14	chr3:179677000-179677200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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