Variant report

Variant	rs7626418
Chromosome Location	chr3:136411243-136411244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136405715..136407497-chr3:136411173..136412850,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13433980	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1484250	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1872240	0.82[EUR][1000 genomes]
rs28682370	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4336059	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4402873	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56047785	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59931907	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs66810260	0.85[EUR][1000 genomes]
rs6763239	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6765239	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6771713	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6772759	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6782151	0.85[EUR][1000 genomes]
rs6788346	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6789541	0.82[EUR][1000 genomes]
rs6799699	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6800969	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6806795	0.84[EUR][1000 genomes]
rs7621970	0.86[EUR][1000 genomes]
rs7623824	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7627292	0.83[EUR][1000 genomes]
rs7629905	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7644346	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7644471	0.84[EUR][1000 genomes]
rs9818372	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9820513	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9828068	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9832572	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9834631	0.84[EUR][1000 genomes]
rs9845950	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9869361	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9869957	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9881078	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136386400-136412800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:136387200-136412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:136390200-136413000	Weak transcription	Pancreas	Pancrea
4	chr3:136390600-136412000	Weak transcription	Thymus	Thymus
5	chr3:136390800-136447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:136395000-136418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:136396600-136411800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:136400600-136412000	Weak transcription	Primary B cells from cord blood	blood
9	chr3:136405000-136412400	Weak transcription	Fetal Intestine Small	intestine
10	chr3:136405400-136413000	Weak transcription	Fetal Heart	heart
11	chr3:136407600-136411800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:136407800-136412400	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:136408200-136411600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:136408400-136411600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:136408800-136412200	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:136408800-136412400	Weak transcription	Right Atrium	heart
17	chr3:136408800-136414600	Weak transcription	Gastric	stomach
18	chr3:136409000-136412000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:136409400-136413000	Weak transcription	Adipose Nuclei	Adipose
20	chr3:136409400-136417800	Weak transcription	Aorta	Aorta
21	chr3:136409400-136422000	Weak transcription	Lung	lung
22	chr3:136409600-136411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:136409600-136411600	Weak transcription	HepG2	liver
24	chr3:136409800-136411600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:136410000-136412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:136410000-136413400	Enhancers	K562	blood
27	chr3:136410200-136411400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:136410200-136411400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:136410200-136411400	Enhancers	Left Ventricle	heart
30	chr3:136410400-136411800	Enhancers	Brain Hippocampus Middle	brain
31	chr3:136410600-136411600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr3:136410600-136411800	Enhancers	Brain Substantia Nigra	brain
33	chr3:136410600-136414800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:136410800-136411600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr3:136410800-136411600	Enhancers	Psoas Muscle	Psoas
36	chr3:136410800-136411600	Enhancers	Right Ventricle	heart
37	chr3:136410800-136412000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:136411000-136411800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:136411000-136412000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr3:136411000-136412000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr3:136411000-136414200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:136411000-136415600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr3:136411000-136416200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:136411000-136444400	Weak transcription	Fetal Lung	lung
45	chr3:136411200-136415000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links