Variant report

Variant	rs9869361
Chromosome Location	chr3:136373016-136373017
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136371791..136373767-chr3:136377876..136379959,2	MCF-7	breast:
2	chr3:136371597..136373384-chr3:136469509..136471218,2	K562	blood:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13433980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1484250	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1872240	0.81[EUR][1000 genomes]
rs28682370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34962604	0.81[AFR][1000 genomes]
rs35644083	0.81[AFR][1000 genomes]
rs4336059	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402873	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55993001	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047785	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59931907	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66810260	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6763239	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765239	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771713	0.83[EUR][1000 genomes]
rs6772759	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782151	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6788346	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789541	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6799699	0.81[EUR][1000 genomes]
rs6800969	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806795	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612160	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7621017	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7621970	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623824	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626418	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7627292	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644346	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644471	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9818372	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9820513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832572	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9834631	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845950	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869957	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876771	0.82[AMR][1000 genomes]
rs9877786	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881078	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136348800-136373600	Weak transcription	Thymus	Thymus
2	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
3	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
4	chr3:136364800-136377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:136365000-136396400	Weak transcription	Gastric	stomach
6	chr3:136365200-136381400	Weak transcription	Pancreas	Pancrea
7	chr3:136368200-136385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:136369000-136386800	Weak transcription	Lung	lung
9	chr3:136370600-136385400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:136370800-136382800	Weak transcription	Ovary	ovary
11	chr3:136371400-136374400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:136371600-136374400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr3:136371800-136374600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:136372000-136383200	Weak transcription	Aorta	Aorta
15	chr3:136372200-136374000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr3:136372400-136373800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
17	chr3:136372400-136374000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr3:136372400-136375600	ZNF genes & repeats	Dnd41	blood
19	chr3:136372600-136374400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr3:136372800-136373800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:136373000-136374200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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