Variant report

Variant	rs9877786
Chromosome Location	chr3:136385519-136385520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136366127..136367827-chr3:136383868..136385669,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13433980	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1484250	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28682370	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4336059	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402873	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55993001	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047785	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59931907	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66810260	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763239	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765239	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769934	0.81[EUR][1000 genomes]
rs6772759	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782151	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6788346	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6789541	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6800969	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806795	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612160	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7621017	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7621970	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623824	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627292	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629905	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644346	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7644471	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9818372	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9820513	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828068	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9834631	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845950	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9869361	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869957	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876771	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
2	chr3:136365000-136396400	Weak transcription	Gastric	stomach
3	chr3:136369000-136386800	Weak transcription	Lung	lung
4	chr3:136374400-136387400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:136374400-136390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:136374600-136387400	Weak transcription	Primary T cells from cord blood	blood
7	chr3:136374600-136389400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:136374800-136390000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:136375600-136390400	Weak transcription	Dnd41	blood
10	chr3:136376400-136387400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:136376600-136392200	Weak transcription	Placenta	Placenta
12	chr3:136376800-136390400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:136377000-136386800	Weak transcription	Left Ventricle	heart
14	chr3:136377000-136387600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:136377000-136389400	Weak transcription	NHEK	skin
16	chr3:136377000-136390400	Weak transcription	Right Ventricle	heart
17	chr3:136378600-136386000	Weak transcription	NH-A	brain
18	chr3:136378600-136386000	Weak transcription	NHLF	lung
19	chr3:136378600-136390400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:136378600-136390400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:136378600-136391400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:136378600-136393600	Weak transcription	Fetal Lung	lung
23	chr3:136378600-136394000	Weak transcription	Adipose Nuclei	Adipose
24	chr3:136378800-136390600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:136379200-136394000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:136379600-136391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:136380800-136391600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:136381600-136390400	Weak transcription	Spleen	Spleen
29	chr3:136381600-136392400	Weak transcription	Small Intestine	intestine
30	chr3:136381800-136386400	Weak transcription	Pancreas	Pancrea
31	chr3:136381800-136387400	Weak transcription	Primary B cells from cord blood	blood
32	chr3:136381800-136388800	Weak transcription	Fetal Stomach	stomach
33	chr3:136381800-136410800	Weak transcription	Psoas Muscle	Psoas
34	chr3:136382600-136394200	Weak transcription	Fetal Heart	heart
35	chr3:136383000-136390400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:136383000-136393200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr3:136383400-136394800	Weak transcription	Ovary	ovary
38	chr3:136383600-136391000	Weak transcription	HepG2	liver
39	chr3:136383600-136395800	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:136383800-136391400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:136383800-136391800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:136384000-136392400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:136384200-136386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:136384200-136387600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:136384200-136390200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:136384200-136390600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:136384200-136390800	Weak transcription	HSMM	muscle
48	chr3:136384200-136391400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:136384200-136392000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:136384200-136392000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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