Variant report

Variant	rs7627183
Chromosome Location	chr3:134843240-134843241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11706065	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11706256	0.85[YRI][hapmap]
rs11708046	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709421	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs11711351	0.83[CEU][hapmap];0.83[CHD][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs11712544	0.84[ASW][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs11713704	0.84[ASW][hapmap]
rs11718934	0.82[CEU][hapmap]
rs4894248	0.81[MEX][hapmap]
rs56144410	0.84[EUR][1000 genomes]
rs66745619	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070409	0.86[EUR][1000 genomes]
rs905047	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3462549	chr3:134842378-134844417	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	esv3462551	chr3:134842419-134844400	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3462550	chr3:134842449-134844349	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	esv3462553	chr3:134842535-134844308	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv13857	chr3:134842590-134844395	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	esv2421444	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	esv2760811	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	nsv441840	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv519871	chr3:134842665-134843286	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134834400-134846600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134842000-134847000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links