Variant report

Variant	esv13857
Chromosome Location	chr3:134842590-134844395
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KY-7	chr3:134843996-134844075	NONHSAT092259

Extended variants
information (count: 55 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114570938	chr3:134842614-134842615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs561438249	chr3:134842638-134842639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs6805145	chr3:134842665-134842666	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs189648958	chr3:134842693-134842694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs9817176	chr3:134842737-134842738	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs533586720	chr3:134842817-134842818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs139869441	chr3:134842837-134842838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181938286	chr3:134842856-134842857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111985329	chr3:134842885-134842886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs186585083	chr3:134842889-134842890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146137998	chr3:134842915-134842916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538303743	chr3:134842956-134842957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs552493499	chr3:134843058-134843059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551870550	chr3:134843076-134843077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140119847	chr3:134843125-134843126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539648174	chr3:134843179-134843180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552976701	chr3:134843213-134843214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs573132116	chr3:134843214-134843215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs535079769	chr3:134843219-134843220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554895491	chr3:134843237-134843238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7627183	chr3:134843240-134843241	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs113428843	chr3:134843274-134843275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2140766	chr3:134843286-134843287	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs578092817	chr3:134843323-134843324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143938494	chr3:134843333-134843334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145874904	chr3:134843343-134843344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529568584	chr3:134843439-134843440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549711102	chr3:134843462-134843463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs377375444	chr3:134843476-134843477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370590109	chr3:134843499-134843500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs149000175	chr3:134843532-134843533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1880531	chr3:134843584-134843585	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs571748170	chr3:134843595-134843596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539247688	chr3:134843609-134843610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191958979	chr3:134843639-134843640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142801089	chr3:134843641-134843642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181194130	chr3:134843657-134843658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs56394048	chr3:134843677-134843678	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs574864126	chr3:134843680-134843681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs537474693	chr3:134843698-134843699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs151025986	chr3:134843731-134843732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs577704562	chr3:134843742-134843743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186699737	chr3:134843753-134843754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs536375370	chr3:134843802-134843803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs554304956	chr3:134843837-134843838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556368450	chr3:134843872-134843873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs74605512	chr3:134843888-134843889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs115659303	chr3:134843889-134843890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs9826352	chr3:134843898-134843899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs34038563	chr3:134843922-134843923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Intracranial aneurysm	16715129	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Developmental delay	21147756	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134834400-134846600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134842000-134847000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134843600-134845400	Weak transcription	Brain Germinal Matrix	brain

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