Variant report

Variant	rs2140766
Chromosome Location	chr3:134843286-134843287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11706256	0.87[CHD][hapmap];0.91[GIH][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs13074164	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13096641	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13096735	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1404579	0.93[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs17765097	0.83[CHB][hapmap]
rs17765685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs940638	0.90[CHD][hapmap]
rs9821105	0.83[CHB][hapmap]
rs9847974	0.81[EUR][1000 genomes]
rs9864760	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9866494	0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs9873080	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3462549	chr3:134842378-134844417	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	esv3462551	chr3:134842419-134844400	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3462550	chr3:134842449-134844349	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	esv3462553	chr3:134842535-134844308	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv13857	chr3:134842590-134844395	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	esv2421444	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	esv2760811	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	nsv441840	chr3:134842625-134844843	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv519871	chr3:134842665-134843286	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134834400-134846600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134842000-134847000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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