Variant report

Variant	rs9873080
Chromosome Location	chr3:134820875-134820876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10935154	0.83[JPT][hapmap]
rs13314927	0.91[JPT][hapmap]
rs17765097	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17765685	0.84[CHB][hapmap]
rs2140766	0.83[CHB][hapmap]
rs3732567	0.91[JPT][hapmap]
rs7372127	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7373984	0.91[JPT][hapmap]
rs7374822	0.91[JPT][hapmap]
rs7374961	0.91[JPT][hapmap]
rs9821105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840666	0.92[JPT][hapmap]
rs9845899	0.92[JPT][hapmap]
rs9847974	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9851553	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866494	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520932	chr3:134809377-134821399	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134813800-134822800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:134817000-134824600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134818800-134822400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:134819000-134822800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:134819200-134822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:134819400-134822600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:134819400-134822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:134819600-134822800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:134819800-134822600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:134819800-134822600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:134819800-134822600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:134819800-134822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:134820000-134822600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:134820000-134822600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:134820200-134822800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:134820600-134821000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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