Variant report

Variant	rs10935154
Chromosome Location	chr3:134830532-134830533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13314927	0.92[JPT][hapmap]
rs17765097	0.81[JPT][hapmap]
rs3732567	0.92[JPT][hapmap]
rs6439557	0.83[EUR][1000 genomes]
rs7372127	0.92[JPT][hapmap]
rs7373984	0.92[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs7374210	0.87[ASN][1000 genomes]
rs7374822	0.92[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs7374961	0.92[JPT][hapmap]
rs9821105	0.85[JPT][hapmap]
rs9840666	0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs9845899	0.92[JPT][hapmap]
rs9847974	0.85[JPT][hapmap]
rs9866494	0.85[JPT][hapmap]
rs9873080	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10935154	PFN2	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134824600-134831200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134828800-134834000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134829200-134834200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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