Variant report

Variant	rs9866494
Chromosome Location	chr3:134825097-134825098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10935154	0.85[JPT][hapmap]
rs13074164	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13096641	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13096735	0.86[JPT][hapmap]
rs13314927	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17765097	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17765685	0.92[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs2140766	0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs3732567	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7372127	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7373984	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs7374822	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs7374961	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs9821105	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9840666	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs9845899	0.93[JPT][hapmap]
rs9847974	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9851553	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9864760	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9872821	0.81[ASN][1000 genomes]
rs9873080	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134821000-134828800	Weak transcription	Fetal Brain Female	brain
3	chr3:134823000-134828400	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134823600-134827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:134824600-134826000	Enhancers	Stomach Mucosa	stomach
7	chr3:134824600-134831200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134825000-134825400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links