Variant report

Variant	rs940638
Chromosome Location	chr3:134850771-134850772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12492126	0.93[JPT][hapmap]
rs13074164	1.00[ASW][hapmap];0.93[CHD][hapmap];0.81[TSI][hapmap]
rs13096641	0.93[CHD][hapmap]
rs13096735	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1404579	0.93[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1553282	0.86[ASW][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2140766	0.90[CHD][hapmap]
rs9864760	0.86[ASW][hapmap];0.93[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:134847400-134859400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134848400-134851000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:134848800-134851000	Enhancers	Fetal Brain Female	brain
7	chr3:134849400-134855600	Enhancers	Fetal Brain Male	brain
8	chr3:134849600-134850800	Enhancers	Brain Hippocampus Middle	brain
9	chr3:134850200-134851000	Enhancers	Brain Angular Gyrus	brain
10	chr3:134850200-134853600	Weak transcription	Psoas Muscle	Psoas
11	chr3:134850400-134852400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:134850400-134852400	Enhancers	Brain Substantia Nigra	brain
13	chr3:134850600-134851000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:134850600-134860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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