Variant report

Variant	rs7627761
Chromosome Location	chr3:23216037-23216038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13314285	0.86[AFR][1000 genomes]
rs6764319	0.92[ASN][1000 genomes]
rs6805790	0.94[ASN][1000 genomes]
rs6809518	0.91[ASN][1000 genomes]
rs7373209	0.97[ASN][1000 genomes]
rs9310712	0.91[ASN][1000 genomes]
rs9310713	0.91[ASN][1000 genomes]
rs9831921	0.86[AFR][1000 genomes]
rs9855620	0.94[ASN][1000 genomes]
rs9867201	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23215600-23216400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:23215800-23216200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:23215800-23216400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:23215800-23216400	Enhancers	Fetal Lung	lung
5	chr3:23216000-23216200	Enhancers	Right Atrium	heart
6	chr3:23216000-23216400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:23216000-23216400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:23216000-23216400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:23216000-23216400	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:23216000-23216400	Enhancers	Gastric	stomach
11	chr3:23216000-23216400	Enhancers	Psoas Muscle	Psoas
12	chr3:23216000-23217800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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