Variant report

Variant	rs7629229
Chromosome Location	chr3:180238214-180238215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11921128	1.00[EUR][1000 genomes]
rs16831624	0.87[AFR][1000 genomes]
rs1982979	0.87[AFR][1000 genomes]
rs56912862	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57660610	1.00[EUR][1000 genomes]
rs58863546	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6785621	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73045712	1.00[EUR][1000 genomes]
rs73045774	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73045779	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7649261	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9758812	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180237000-180241000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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