Variant report

Variant	rs16831624
Chromosome Location	chr3:180184614-180184615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11921128	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1982979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3810763	1.00[CEU][hapmap]
rs56912862	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs57660610	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58863546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6785621	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043708	0.81[AMR][1000 genomes]
rs73045712	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045779	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7629229	0.87[AFR][1000 genomes]
rs7649261	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9758812	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv516634	chr3:180171589-180184614	Weak transcription Enhancers Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180176000-180187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180183800-180186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:180184600-180185400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:180184600-180186000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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