Variant report

Variant	rs7629897
Chromosome Location	chr3:67626848-67626849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:67622636..67625253-chr3:67625381..67627788,2	MCF-7	breast:
2	chr3:67626314..67629227-chr3:67636253..67638089,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13317640	1.00[AFR][1000 genomes]
rs59871151	1.00[AFR][1000 genomes]
rs61042381	1.00[AFR][1000 genomes]
rs7650892	1.00[AFR][1000 genomes]
rs9815939	0.95[AFR][1000 genomes]
rs9819219	1.00[AFR][1000 genomes]
rs9840770	0.95[AFR][1000 genomes]
rs9851783	1.00[AFR][1000 genomes]
rs9858628	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67578200-67634600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:67579400-67633800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:67579400-67657600	Weak transcription	Pancreas	Pancrea
4	chr3:67582200-67637000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:67587400-67628000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:67594000-67631000	Weak transcription	K562	blood
7	chr3:67595000-67639400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:67596400-67629000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:67598000-67644200	Weak transcription	NHLF	lung
10	chr3:67599600-67629000	Weak transcription	Right Ventricle	heart
11	chr3:67600200-67628800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
13	chr3:67602200-67644200	Weak transcription	Gastric	stomach
14	chr3:67602200-67654800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:67602200-67655400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:67602200-67656000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:67602400-67646200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:67602600-67635600	Weak transcription	Aorta	Aorta
19	chr3:67609200-67637000	Weak transcription	Ovary	ovary
20	chr3:67609400-67644000	Weak transcription	NHDF-Ad	bronchial
21	chr3:67610000-67628200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
23	chr3:67614000-67658600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:67615000-67628800	Weak transcription	HUVEC	blood vessel
25	chr3:67616600-67644200	Weak transcription	HSMM	muscle
26	chr3:67618600-67655600	Weak transcription	NH-A	brain
27	chr3:67620400-67639800	Weak transcription	Small Intestine	intestine
28	chr3:67621000-67637200	Weak transcription	HepG2	liver
29	chr3:67621200-67644200	Weak transcription	Esophagus	oesophagus
30	chr3:67621200-67657600	Weak transcription	Fetal Stomach	stomach
31	chr3:67621400-67640000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:67621400-67650400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:67621600-67634000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:67621800-67628800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:67621800-67629000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:67621800-67634600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr3:67621800-67639400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:67621800-67640600	Weak transcription	Placenta	Placenta
39	chr3:67621800-67644000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:67621800-67658000	Weak transcription	Thymus	Thymus
41	chr3:67622000-67628600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr3:67622000-67628800	Weak transcription	Fetal Lung	lung
43	chr3:67622000-67635600	Weak transcription	GM12878-XiMat	blood
44	chr3:67622000-67640800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr3:67622000-67641400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:67622000-67648800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:67622200-67657400	Weak transcription	Brain Substantia Nigra	brain
48	chr3:67622400-67635800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:67622400-67637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:67622400-67647800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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