Variant report

Variant	rs9840770
Chromosome Location	chr3:67620695-67620696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1075642	1.00[EUR][1000 genomes]
rs13317640	0.95[AFR][1000 genomes]
rs13319718	1.00[EUR][1000 genomes]
rs2076900	1.00[EUR][1000 genomes]
rs2363092	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2772455	0.89[ASN][1000 genomes]
rs2772457	0.89[ASN][1000 genomes]
rs3952242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59871151	0.95[AFR][1000 genomes]
rs60697032	1.00[EUR][1000 genomes]
rs61042381	0.95[AFR][1000 genomes]
rs61390179	1.00[EUR][1000 genomes]
rs72929314	1.00[EUR][1000 genomes]
rs72929317	1.00[EUR][1000 genomes]
rs7629897	0.95[AFR][1000 genomes]
rs7650892	0.95[AFR][1000 genomes]
rs935733	1.00[EUR][1000 genomes]
rs9815939	0.89[AFR][1000 genomes]
rs9819219	0.95[AFR][1000 genomes]
rs9831152	1.00[EUR][1000 genomes]
rs9851783	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9858628	0.95[AFR][1000 genomes]
rs9859371	1.00[EUR][1000 genomes]
rs9883114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67560600-67620800	Weak transcription	Esophagus	oesophagus
2	chr3:67578200-67634600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:67579400-67623000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:67579400-67633800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:67579400-67657600	Weak transcription	Pancreas	Pancrea
6	chr3:67582200-67637000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:67587400-67628000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:67594000-67631000	Weak transcription	K562	blood
9	chr3:67595000-67639400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:67596400-67629000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:67598000-67644200	Weak transcription	NHLF	lung
12	chr3:67599600-67620800	Weak transcription	Dnd41	blood
13	chr3:67599600-67621000	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:67599600-67629000	Weak transcription	Right Ventricle	heart
15	chr3:67600200-67628800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:67600400-67624400	Weak transcription	Adipose Nuclei	Adipose
17	chr3:67600800-67621000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
19	chr3:67602200-67620800	Weak transcription	Fetal Stomach	stomach
20	chr3:67602200-67644200	Weak transcription	Gastric	stomach
21	chr3:67602200-67654800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:67602200-67655400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:67602200-67656000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:67602400-67624000	Weak transcription	Psoas Muscle	Psoas
25	chr3:67602400-67646200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:67602600-67635600	Weak transcription	Aorta	Aorta
27	chr3:67607000-67626200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:67609200-67621200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:67609200-67624400	Weak transcription	Left Ventricle	heart
30	chr3:67609200-67637000	Weak transcription	Ovary	ovary
31	chr3:67609400-67644000	Weak transcription	NHDF-Ad	bronchial
32	chr3:67609800-67620800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:67609800-67620800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:67609800-67621000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:67610000-67628200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:67610200-67620800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:67612200-67621000	Weak transcription	Brain Angular Gyrus	brain
38	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
39	chr3:67612600-67620800	Weak transcription	A549	lung
40	chr3:67612600-67621000	Weak transcription	Fetal Lung	lung
41	chr3:67613000-67621600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:67614000-67658600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:67615000-67628800	Weak transcription	HUVEC	blood vessel
44	chr3:67615200-67620800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:67616400-67621000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:67616600-67644200	Weak transcription	HSMM	muscle
47	chr3:67618600-67655600	Weak transcription	NH-A	brain
48	chr3:67618800-67621600	Weak transcription	Brain Substantia Nigra	brain
49	chr3:67619800-67621000	Strong transcription	Primary T cells from cord blood	blood
50	chr3:67619800-67621000	Enhancers	HepG2	liver

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