Variant report

Variant	rs9859371
Chromosome Location	chr3:67717514-67717515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1075642	1.00[EUR][1000 genomes]
rs13319718	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13327007	0.90[ASN][1000 genomes]
rs2076900	1.00[EUR][1000 genomes]
rs2363092	1.00[EUR][1000 genomes]
rs3952242	1.00[EUR][1000 genomes]
rs60697032	1.00[EUR][1000 genomes]
rs61390179	1.00[EUR][1000 genomes]
rs72929314	1.00[EUR][1000 genomes]
rs72929317	1.00[EUR][1000 genomes]
rs935733	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9831152	1.00[EUR][1000 genomes]
rs9840770	1.00[EUR][1000 genomes]
rs9851783	1.00[EUR][1000 genomes]
rs9883114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428739	chr3:67656829-67730379	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67706400-67721000	Weak transcription	Left Ventricle	heart
4	chr3:67706800-67726600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:67706800-67727200	Weak transcription	A549	lung
6	chr3:67712200-67728400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:67714200-67718800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:67715200-67717600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:67716200-67724200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:67717200-67730800	Weak transcription	Gastric	stomach
11	chr3:67717400-67717600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:67717400-67723600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:67717400-67724600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:67717400-67728200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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