Variant report

Variant	rs7630245
Chromosome Location	chr3:111767194-111767195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10934131	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10934132	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs10934133	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs11711987	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs11713084	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs11713897	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs11716665	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs11720631	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs11927988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11928025	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12489437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16859115	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs16859126	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs17443498	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs17502804	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs4682081	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4682351	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs4682352	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs4682353	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs62280175	0.81[EUR][1000 genomes]
rs7622025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7625159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs774768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs920708	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs9288935	0.90[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs9829091	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:111762400-111771000	Weak transcription	Gastric	stomach
5	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:111763000-111767400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:111763000-111767600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:111763200-111767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:111763200-111772800	Weak transcription	Thymus	Thymus
10	chr3:111763400-111769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:111766400-111767400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:111766800-111767200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:111766800-111768600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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