Variant report

Variant	rs7634255
Chromosome Location	chr3:160360696-160360697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160281524..160283779-chr3:160359720..160362142,2	K562	blood:
2	chr3:160284019..160287638-chr3:160358155..160361126,3	K562	blood:

Variant related genes	Relation type
ENSG00000186432	Chromatin interaction
ENSG00000229320	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10460866	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936203	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11709232	0.82[CHB][hapmap]
rs11711627	0.87[ASN][1000 genomes]
rs11712392	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713230	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720693	0.92[EUR][1000 genomes]
rs12639488	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13062928	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13065269	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13072556	0.89[EUR][1000 genomes]
rs13074231	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13075424	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13085507	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1403045	0.83[CEU][hapmap]
rs16831337	0.84[CEU][hapmap]
rs17236494	0.82[CHB][hapmap]
rs17826257	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1879797	0.87[CEU][hapmap]
rs1882125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1920650	0.87[ASN][1000 genomes]
rs2141668	0.87[ASN][1000 genomes]
rs2178451	0.84[ASN][1000 genomes]
rs2367209	0.82[EUR][1000 genomes]
rs34058107	0.92[EUR][1000 genomes]
rs34444753	0.88[EUR][1000 genomes]
rs35008770	0.87[ASN][1000 genomes]
rs35498840	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4133253	0.84[CEU][hapmap]
rs4679903	0.87[ASN][1000 genomes]
rs4679904	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57718211	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60339919	0.88[EUR][1000 genomes]
rs6792943	0.88[EUR][1000 genomes]
rs6806755	0.84[CEU][hapmap]
rs71314011	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7610939	0.84[CEU][hapmap]
rs7633839	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2757019	chr3:160351021-160380161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2759194	chr3:160351021-160380161	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv10343	chr3:160355620-160366624	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3463584	chr3:160355760-160366323	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3463585	chr3:160355760-160366323	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv822307	chr3:160355841-160366230	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv2421521	chr3:160356940-160362285	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2763313	chr3:160356940-160362285	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7634255	KLRB1	trans	parietal	SCAN
rs7634255	SMC4	Cis_1M	lymphoblastoid	RTeQTL
rs7634255	IFT80	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160358200-160361000	Enhancers	Hela-S3	cervix
2	chr3:160360200-160360800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:160360200-160362000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:160360200-160362200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:160360400-160362200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links