Variant report

Variant	rs7635479
Chromosome Location	chr3:142188392-142188393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57445815	1.00[AMR][1000 genomes]
rs57504134	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58495569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59676009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778905	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv877558	chr3:142123841-142331360	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv877559	chr3:142132749-142331360	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv877561	chr3:142152925-142331360	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv528954	chr3:142164017-142219542	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142167200-142192400	Weak transcription	Pancreas	Pancrea
2	chr3:142167400-142199400	Weak transcription	Colonic Mucosa	Colon
3	chr3:142167400-142199600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:142167400-142234600	Weak transcription	Psoas Muscle	Psoas
5	chr3:142167600-142191800	Weak transcription	Fetal Brain Female	brain
6	chr3:142167600-142199600	Weak transcription	Ovary	ovary
7	chr3:142167600-142200000	Weak transcription	HSMMtube	muscle
8	chr3:142167600-142203000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:142167800-142188800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:142167800-142190400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:142167800-142199400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:142167800-142200000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:142167800-142200000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:142168000-142192000	Weak transcription	Fetal Lung	lung
15	chr3:142168000-142200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:142168000-142200000	Weak transcription	Fetal Kidney	kidney
17	chr3:142169800-142192200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:142170200-142189200	Weak transcription	Aorta	Aorta
19	chr3:142170600-142199200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:142170600-142199600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:142170600-142203200	Weak transcription	Spleen	Spleen
22	chr3:142172800-142199200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:142175400-142192000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:142175400-142192400	Weak transcription	Fetal Stomach	stomach
25	chr3:142175400-142199200	Weak transcription	Thymus	Thymus
26	chr3:142176200-142199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:142177400-142199200	Weak transcription	Right Ventricle	heart
28	chr3:142177600-142200200	Weak transcription	Hela-S3	cervix
29	chr3:142177800-142199200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:142177800-142200000	Weak transcription	NH-A	brain
31	chr3:142178000-142191800	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:142178000-142199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:142178000-142199600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:142178000-142200000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:142178200-142189800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:142178200-142192000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:142178200-142192000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:142178200-142192000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:142178200-142199200	Weak transcription	Placenta	Placenta
40	chr3:142178200-142199400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:142178200-142199600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:142178200-142200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:142178400-142192000	Weak transcription	Fetal Thymus	thymus
44	chr3:142178400-142199600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:142178400-142200000	Weak transcription	HMEC	breast
46	chr3:142178400-142200200	Weak transcription	Fetal Heart	heart
47	chr3:142178600-142191800	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:142178600-142199200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:142178600-142199200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:142178600-142200200	Weak transcription	NHDF-Ad	bronchial

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