Variant report

Variant	rs7635871
Chromosome Location	chr3:99612079-99612080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99611356..99613226-chr3:99640035..99641945,2	K562	blood:
2	chr3:99596926..99599142-chr3:99610230..99612159,2	K562	blood:
3	chr3:99601088..99603478-chr3:99611897..99614954,3	MCF-7	breast:
4	chr3:99610779..99612838-chr3:99701671..99703484,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1038295	0.87[ASN][1000 genomes]
rs10804762	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12485299	0.83[ASN][1000 genomes]
rs12486901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489030	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491153	0.86[EUR][1000 genomes]
rs12493124	0.95[EUR][1000 genomes]
rs1492343	0.83[ASN][1000 genomes]
rs1871847	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590972	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3732444	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3921767	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928222	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55874130	0.95[EUR][1000 genomes]
rs55881709	0.91[EUR][1000 genomes]
rs55964918	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56140081	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56223679	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56260910	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56335268	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60119031	0.90[ASN][1000 genomes]
rs61010376	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792339	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800456	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73858966	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73859911	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73860464	0.83[ASN][1000 genomes]
rs73860470	0.86[ASN][1000 genomes]
rs7632345	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635633	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99595600-99612800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:99596600-99614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99597200-99614200	Weak transcription	HMEC	breast
4	chr3:99600800-99638600	Weak transcription	Left Ventricle	heart
5	chr3:99604000-99612600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:99604000-99613200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:99604000-99614400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:99604400-99614000	Weak transcription	HUVEC	blood vessel
9	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
10	chr3:99605000-99613600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:99605000-99614600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:99605200-99613800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:99610200-99613600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:99610200-99613800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:99610200-99614200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:99610200-99614400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:99610200-99614600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:99610200-99614600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:99610200-99614600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:99611200-99613800	Weak transcription	HSMM	muscle
21	chr3:99611400-99613800	Weak transcription	NHDF-Ad	bronchial
22	chr3:99611600-99614000	Weak transcription	NHLF	lung
23	chr3:99611600-99614200	Weak transcription	Psoas Muscle	Psoas
24	chr3:99611600-99614400	Weak transcription	HepG2	liver
25	chr3:99611600-99614600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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