Variant report

Variant	rs7636914
Chromosome Location	chr3:141158614-141158615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141028766..141032567-chr3:141157435..141160159,4	K562	blood:
2	chr3:141156646..141158952-chr3:141162167..141164221,2	K562	blood:
3	chr3:141112658..141115494-chr3:141157644..141160084,2	K562	blood:
4	chr3:141157834..141161364-chr3:141205126..141207553,3	K562	blood:
5	chr3:141157834..141161921-chr3:141205126..141207972,3	K562	blood:
6	chr3:141028495..141032567-chr3:141157435..141162053,7	K562	blood:
7	chr3:141087440..141090679-chr3:141157733..141160398,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1077181	0.86[ASW][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11708253	0.80[AMR][1000 genomes]
rs11709875	1.00[GIH][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]
rs11714208	0.85[MEX][hapmap]
rs11717842	1.00[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs12695734	0.82[AMR][1000 genomes]
rs12695735	0.82[AMR][1000 genomes]
rs12695740	0.85[MEX][hapmap]
rs13059128	0.86[ASW][hapmap];0.84[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13072100	0.96[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes]
rs13083593	0.96[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs13084444	0.96[GIH][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs13088429	0.80[AMR][1000 genomes]
rs1863870	1.00[GIH][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes]
rs720663	0.85[MEX][hapmap]
rs9289629	0.85[MEX][hapmap]
rs9822575	0.85[MEX][hapmap]
rs9833121	0.85[MEX][hapmap]
rs9837202	0.82[AMR][1000 genomes]
rs9849180	0.96[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs9850416	0.85[MEX][hapmap]
rs9865971	0.85[MEX][hapmap]
rs9870749	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7636914	RASA2	cis	parietal	SCAN
rs7636914	RASA2	cis	cerebellum	SCAN
rs7636914	GK5	cis	parietal	SCAN
rs7636914	ATP1B3	cis	cerebellum	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
4	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
9	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
10	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:141146600-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:141147000-141161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:141147000-141161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:141147400-141160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:141148600-141160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:141148800-141160000	Weak transcription	NHEK	skin
21	chr3:141148800-141161600	Weak transcription	Brain Germinal Matrix	brain
22	chr3:141148800-141161600	Weak transcription	Spleen	Spleen
23	chr3:141148800-141161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:141148800-141164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:141149400-141164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:141149600-141161200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:141149800-141159000	Weak transcription	HMEC	breast
28	chr3:141149800-141160000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:141149800-141160000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:141150800-141161200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:141151000-141160000	Weak transcription	Hela-S3	cervix
32	chr3:141153200-141161600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:141153200-141164000	Weak transcription	Psoas Muscle	Psoas
34	chr3:141153400-141160400	Weak transcription	Right Atrium	heart
35	chr3:141153600-141160000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:141155000-141161400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:141155200-141159400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:141155400-141161200	Weak transcription	Liver	Liver
39	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
40	chr3:141155600-141159000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:141155800-141160200	Weak transcription	Small Intestine	intestine
42	chr3:141156000-141160000	Strong transcription	NHDF-Ad	bronchial
43	chr3:141156200-141160000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:141156200-141161800	Weak transcription	Ovary	ovary
45	chr3:141156400-141161600	Weak transcription	Colonic Mucosa	Colon
46	chr3:141156400-141161800	Weak transcription	Gastric	stomach
47	chr3:141156400-141161800	Weak transcription	Pancreas	Pancrea
48	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
49	chr3:141156600-141159000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:141156600-141159400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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