Variant report

Variant	rs9837202
Chromosome Location	chr3:141187097-141187098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141186500..141188582-chr3:141205039..141207172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1077181	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11557453	0.81[CEU][hapmap]
rs11707656	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11708253	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711318	0.81[EUR][1000 genomes]
rs11714208	0.85[CEU][hapmap]
rs11716776	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717144	0.92[CEU][hapmap]
rs11717842	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695735	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695736	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695740	0.87[CEU][hapmap]
rs12695741	0.90[CEU][hapmap]
rs12695743	0.84[CEU][hapmap]
rs13059128	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13072100	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078872	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083593	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084444	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095168	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs13098300	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13099945	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1863870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312194	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2312266	1.00[ASN][1000 genomes]
rs34317570	0.83[EUR][1000 genomes]
rs34342794	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3806647	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71619392	0.81[EUR][1000 genomes]
rs720663	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7636914	0.82[AMR][1000 genomes]
rs7651511	0.83[EUR][1000 genomes]
rs9289629	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9289634	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9808953	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9822575	0.92[CEU][hapmap]
rs9823528	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9830055	0.92[CEU][hapmap];0.80[YRI][hapmap];0.82[EUR][1000 genomes]
rs9833121	0.92[CEU][hapmap]
rs9836050	0.92[CEU][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs9836818	0.83[EUR][1000 genomes]
rs9838230	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9838419	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9840697	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9843866	0.83[EUR][1000 genomes]
rs9849180	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850416	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9865971	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs9868956	0.92[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9870749	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv965217	chr3:141184266-141190303	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
3	chr3:141184400-141188200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:141184400-141188800	Weak transcription	NH-A	brain
5	chr3:141184400-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:141184600-141188200	Weak transcription	Osteobl	bone
7	chr3:141184600-141189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:141184600-141189800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:141184600-141201000	Weak transcription	NHLF	lung

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