Variant report

Variant	rs9836818
Chromosome Location	chr3:141234717-141234718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141232140..141234840-chr3:141247609..141249349,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11557453	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707656	0.85[EUR][1000 genomes]
rs11708253	0.83[EUR][1000 genomes]
rs11711318	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11713714	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11714208	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11716776	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11717144	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717842	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12695734	0.83[EUR][1000 genomes]
rs12695735	0.82[EUR][1000 genomes]
rs12695736	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12695740	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695741	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695743	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062809	0.87[ASN][1000 genomes]
rs13067519	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068454	0.80[EUR][1000 genomes]
rs13072100	0.85[EUR][1000 genomes]
rs13078872	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13083593	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13084444	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13088429	0.83[EUR][1000 genomes]
rs13095168	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863870	0.83[EUR][1000 genomes]
rs2312194	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732872	0.90[ASN][1000 genomes]
rs3806647	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4334619	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71619392	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs720663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651511	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9289629	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9289634	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822575	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9823528	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829588	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9830055	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833121	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836050	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837202	0.83[EUR][1000 genomes]
rs9838230	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838419	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840159	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840697	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9849180	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9850416	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868956	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870749	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873042	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141235800	Weak transcription	Gastric	stomach
2	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
3	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:141210400-141248000	Weak transcription	NHLF	lung
5	chr3:141211400-141235400	Weak transcription	A549	lung
6	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:141217800-141235800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
9	chr3:141218000-141235400	Weak transcription	NHEK	skin
10	chr3:141218200-141235600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:141218600-141235400	Weak transcription	Brain Germinal Matrix	brain
12	chr3:141218800-141235600	Weak transcription	Left Ventricle	heart
13	chr3:141219000-141235200	Weak transcription	Hela-S3	cervix
14	chr3:141219000-141235400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:141219000-141235600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:141219200-141235200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:141221000-141235600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:141221200-141235400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:141221400-141235000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:141221600-141235600	Weak transcription	Fetal Stomach	stomach
21	chr3:141221800-141235400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:141226200-141235600	Weak transcription	Thymus	Thymus
23	chr3:141226400-141235200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:141226400-141235400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:141226600-141235600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:141226600-141235600	Weak transcription	Pancreas	Pancrea
27	chr3:141226600-141235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:141226600-141235800	Weak transcription	Brain Angular Gyrus	brain
29	chr3:141226600-141236200	Weak transcription	Brain Substantia Nigra	brain
30	chr3:141226600-141254400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:141226800-141235400	Weak transcription	HepG2	liver
32	chr3:141227400-141242800	Weak transcription	Ovary	ovary
33	chr3:141227600-141235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:141227600-141236200	Weak transcription	Lung	lung
35	chr3:141228400-141246600	Strong transcription	Dnd41	blood
36	chr3:141229000-141236200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:141229200-141235400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:141229200-141236200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:141229400-141235600	Strong transcription	Primary B cells from cord blood	blood
40	chr3:141229400-141267400	Weak transcription	Fetal Heart	heart
41	chr3:141229800-141235400	Weak transcription	Placenta	Placenta
42	chr3:141229800-141235400	Weak transcription	K562	blood
43	chr3:141230000-141235400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:141230000-141235800	Weak transcription	Colonic Mucosa	Colon
45	chr3:141230000-141235800	Weak transcription	Esophagus	oesophagus
46	chr3:141230000-141235800	Weak transcription	NHDF-Ad	bronchial
47	chr3:141230000-141236400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:141230000-141259800	Weak transcription	Small Intestine	intestine
49	chr3:141230400-141243000	Weak transcription	Spleen	Spleen
50	chr3:141230600-141235400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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