Variant report

Variant	rs34342794
Chromosome Location	chr3:141209101-141209102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141208093..141210015-chr3:141222017..141224626,2	MCF-7	breast:
2	chr3:141208057..141209932-chr3:141278258..141280316,2	MCF-7	breast:
3	chr3:141206890..141209130-chr3:141222372..141224478,3	MCF-7	breast:
4	chr3:141205894..141211656-chr3:141222007..141226023,7	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11557453	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707656	0.85[EUR][1000 genomes]
rs11708253	0.83[EUR][1000 genomes]
rs11709875	0.81[AMR][1000 genomes]
rs11711318	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11713714	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11714208	0.93[ASN][1000 genomes]
rs11716776	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11717144	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717842	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12695734	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12695735	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12695736	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12695740	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695741	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695743	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062809	0.87[ASN][1000 genomes]
rs13067519	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068454	0.80[EUR][1000 genomes]
rs13072100	0.85[EUR][1000 genomes]
rs13078872	0.95[EUR][1000 genomes]
rs13083593	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13084444	0.93[EUR][1000 genomes]
rs13088429	0.83[EUR][1000 genomes]
rs13095168	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099945	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863870	0.83[EUR][1000 genomes]
rs2312194	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3732872	0.90[ASN][1000 genomes]
rs3806647	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4334619	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71619392	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs720663	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651511	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9289629	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9289634	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808953	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822575	0.85[EUR][1000 genomes]
rs9823528	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829588	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9830055	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833121	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836050	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836818	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837202	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9838230	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838419	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840159	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9840697	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843866	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9849180	0.95[EUR][1000 genomes]
rs9850416	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865971	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868956	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870749	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873042	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
2	chr3:141207000-141209400	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
4	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
5	chr3:141207000-141235800	Weak transcription	Gastric	stomach
6	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
7	chr3:141207200-141209200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
8	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
9	chr3:141207400-141209200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:141207400-141209200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:141207400-141209200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:141207400-141209200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:141207400-141209400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:141207400-141209400	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:141207400-141209600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:141207400-141209600	Genic enhancers	Fetal Thymus	thymus
17	chr3:141207400-141209800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:141207400-141209800	Weak transcription	Brain Anterior Caudate	brain
19	chr3:141207400-141210000	Weak transcription	NHLF	lung
20	chr3:141207400-141210200	Weak transcription	HSMMtube	muscle
21	chr3:141207400-141210400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr3:141207400-141211600	Weak transcription	Fetal Brain Male	brain
23	chr3:141207400-141213000	Weak transcription	Brain Angular Gyrus	brain
24	chr3:141207400-141215000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr3:141207400-141217200	Weak transcription	Fetal Heart	heart
26	chr3:141207400-141217400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:141207400-141217600	Weak transcription	Colonic Mucosa	Colon
28	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:141207600-141209600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:141207800-141210400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr3:141207800-141211000	Weak transcription	Fetal Kidney	kidney
32	chr3:141207800-141217400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
34	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:141208000-141209200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:141208000-141209200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:141208000-141209400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr3:141208000-141209400	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:141208000-141209800	Enhancers	Thymus	Thymus
40	chr3:141208000-141210000	Weak transcription	A549	lung
41	chr3:141208000-141210200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr3:141208000-141210200	Enhancers	K562	blood
43	chr3:141208000-141210400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr3:141208000-141210800	Genic enhancers	Primary B cells from cord blood	blood
45	chr3:141208000-141211400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:141208000-141211800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:141208000-141212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:141208000-141217400	Weak transcription	NHEK	skin
49	chr3:141208200-141209400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:141208200-141209600	Enhancers	HUES64 Cell Line	embryonic stem cell

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