Variant report

Variant	rs71619392
Chromosome Location	chr3:141216134-141216135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141215787..141218632-chr3:141221462..141225084,3	K562	blood:
2	chr3:141209148..141211222-chr3:141213660..141216551,2	MCF-7	breast:
3	chr3:141214596..141217091-chr3:141218047..141220301,2	K562	blood:
4	chr3:141212359..141214375-chr3:141215681..141218041,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11557453	0.80[EUR][1000 genomes]
rs11707656	0.83[EUR][1000 genomes]
rs11708253	0.81[EUR][1000 genomes]
rs11711318	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11713714	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11716776	0.91[EUR][1000 genomes]
rs11717144	0.81[EUR][1000 genomes]
rs11717842	0.92[EUR][1000 genomes]
rs12695734	0.81[EUR][1000 genomes]
rs12695735	0.80[EUR][1000 genomes]
rs12695736	0.91[EUR][1000 genomes]
rs12695740	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12695741	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12695743	0.81[EUR][1000 genomes]
rs13072100	0.82[EUR][1000 genomes]
rs13078872	0.92[EUR][1000 genomes]
rs13083593	0.91[EUR][1000 genomes]
rs13084444	0.91[EUR][1000 genomes]
rs13088429	0.81[EUR][1000 genomes]
rs13095168	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13099945	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1863870	0.81[EUR][1000 genomes]
rs2312194	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34317570	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34342794	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3806647	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4334619	0.81[EUR][1000 genomes]
rs720663	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7651511	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289634	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9808953	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9822575	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9823528	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9829588	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9830055	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9833121	0.81[EUR][1000 genomes]
rs9836050	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9836818	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9837202	0.81[EUR][1000 genomes]
rs9838230	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838419	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9840159	0.81[EUR][1000 genomes]
rs9840697	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9843866	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9849180	0.92[EUR][1000 genomes]
rs9850416	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865971	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868956	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9870749	0.81[EUR][1000 genomes]
rs9873042	0.80[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
2	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
3	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
4	chr3:141207000-141235800	Weak transcription	Gastric	stomach
5	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
6	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
7	chr3:141207400-141217200	Weak transcription	Fetal Heart	heart
8	chr3:141207400-141217400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:141207400-141217600	Weak transcription	Colonic Mucosa	Colon
10	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:141207800-141217400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
13	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:141208000-141217400	Weak transcription	NHEK	skin
15	chr3:141208400-141217600	Weak transcription	HMEC	breast
16	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
17	chr3:141208400-141232600	Weak transcription	NH-A	brain
18	chr3:141208600-141217000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:141209200-141216400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:141209200-141217000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:141209800-141217400	Weak transcription	Fetal Thymus	thymus
23	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:141210200-141216800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:141210200-141218000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:141210200-141224200	Weak transcription	K562	blood
28	chr3:141210400-141217000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr3:141210400-141217200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:141210400-141217200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr3:141210400-141217600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:141210400-141248000	Weak transcription	NHLF	lung
33	chr3:141210600-141217400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:141211000-141229400	Weak transcription	NHDF-Ad	bronchial
35	chr3:141211200-141220000	Weak transcription	HepG2	liver
36	chr3:141211400-141235400	Weak transcription	A549	lung
37	chr3:141211600-141216400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:141211600-141217600	Weak transcription	HUVEC	blood vessel
39	chr3:141211600-141220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:141213000-141217000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:141213200-141216800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:141213600-141216400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:141213800-141216400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr3:141214800-141216400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:141215000-141216200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:141215000-141216200	Weak transcription	Primary T cells from cord blood	blood
47	chr3:141215000-141216200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr3:141215000-141216200	Weak transcription	Dnd41	blood
49	chr3:141215000-141216400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr3:141215000-141216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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