Variant report

Variant	rs9840697
Chromosome Location	chr3:141210749-141210750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141172850..141174604-chr3:141209853..141211525,2	MCF-7	breast:
2	chr3:141209232..141210947-chr3:141248377..141250708,2	K562	blood:
3	chr3:141209148..141211222-chr3:141213660..141216551,2	MCF-7	breast:
4	chr3:141205894..141211656-chr3:141222007..141226023,7	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1077181	0.81[AMR][1000 genomes]
rs11557453	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707656	0.85[EUR][1000 genomes]
rs11708253	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11709875	0.82[AMR][1000 genomes]
rs11711318	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11713714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11714208	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11716776	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11717144	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717842	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12695734	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12695735	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12695736	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12695740	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695741	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12695743	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062809	0.87[ASN][1000 genomes]
rs13067519	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068454	0.80[EUR][1000 genomes]
rs13072100	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078872	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13083593	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13084444	0.93[EUR][1000 genomes]
rs13088429	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13095168	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099945	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863870	0.83[EUR][1000 genomes]
rs2312194	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342794	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732872	0.90[ASN][1000 genomes]
rs3806647	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4334619	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71619392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs720663	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651511	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9289629	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9289634	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808953	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822575	0.85[EUR][1000 genomes]
rs9823528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829588	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9830055	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833121	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836050	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836818	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837202	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9838230	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840159	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9843866	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9849180	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9850416	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865971	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868956	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870749	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9873042	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141206800-141217400	Weak transcription	Spleen	Spleen
2	chr3:141207000-141216600	Weak transcription	Small Intestine	intestine
3	chr3:141207000-141217400	Weak transcription	Left Ventricle	heart
4	chr3:141207000-141235800	Weak transcription	Gastric	stomach
5	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
6	chr3:141207200-141217400	Weak transcription	Psoas Muscle	Psoas
7	chr3:141207400-141211600	Weak transcription	Fetal Brain Male	brain
8	chr3:141207400-141213000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:141207400-141215000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:141207400-141217200	Weak transcription	Fetal Heart	heart
11	chr3:141207400-141217400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:141207400-141217600	Weak transcription	Colonic Mucosa	Colon
13	chr3:141207400-141231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:141207800-141211000	Weak transcription	Fetal Kidney	kidney
15	chr3:141207800-141217400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:141207800-141233200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:141207800-141235600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:141208000-141210800	Genic enhancers	Primary B cells from cord blood	blood
19	chr3:141208000-141211400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:141208000-141211800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:141208000-141212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:141208000-141217400	Weak transcription	NHEK	skin
23	chr3:141208200-141211000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:141208200-141211600	Enhancers	HUVEC	blood vessel
25	chr3:141208200-141213000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:141208200-141214800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:141208400-141212000	Weak transcription	Ovary	ovary
28	chr3:141208400-141214600	Weak transcription	HSMM	muscle
29	chr3:141208400-141215000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:141208400-141217600	Weak transcription	HMEC	breast
31	chr3:141208400-141231200	Weak transcription	Fetal Lung	lung
32	chr3:141208400-141232600	Weak transcription	NH-A	brain
33	chr3:141208600-141215000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:141208600-141217000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:141208800-141215000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr3:141209200-141213000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr3:141209200-141216400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:141209200-141217000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:141209400-141211200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:141209600-141213800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:141209600-141232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:141209800-141211000	Enhancers	NHDF-Ad	bronchial
43	chr3:141209800-141217400	Weak transcription	Fetal Thymus	thymus
44	chr3:141209800-141234200	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:141210000-141211400	Enhancers	A549	lung
46	chr3:141210000-141211600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:141210000-141211600	Enhancers	Primary T cells from cord blood	blood
48	chr3:141210000-141211600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:141210000-141221000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:141210200-141214600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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