Variant report

Variant	rs11716776
Chromosome Location	chr3:141203980-141203981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:141203940-141203990	HL-60	blood:	n/a
2	chr3:141203940-141203990	Jurkat	blood:	n/a
3	chr3:141203940-141203990	HepG2	liver:	n/a
4	chr3:141203940-141203990	HCT-116	colon:	n/a
5	chr3:141203940-141203990	CMK	blood:	n/a
6	chr3:141203940-141203990	GM19239	blood:	n/a
7	chr3:141203940-141203990	BJ	skin:	n/a
8	chr3:141203940-141203990	SK-N-SH	brain:	n/a
9	chr3:141203940-141203990	HRE	kidney:	n/a
10	chr3:141203940-141203990	HUVEC	blood vessel:	n/a
11	chr3:141203940-141203990	HCF	heart:	n/a
12	chr3:141203940-141203990	AG04449	skin:	fetal
13	chr3:141203940-141203990	BE2_C	brain:	n/a
14	chr3:141203940-141203990	GM12892	blood:	n/a
15	chr3:141203940-141203990	NT2-D1	testis:	n/a
16	chr3:141203940-141203990	MCF-7	breast:	n/a
17	chr3:141203940-141203990	HCM	heart:	n/a
18	chr3:141203940-141203990	HAEpiC	amniotic membrane:	n/a
19	chr3:141203940-141203990	AoSMC	blood vessel:	n/a
20	chr3:141203940-141203990	ECC-1	luminal epithelium:	n/a
21	chr3:141203940-141203990	H1-hESC	embryonic stem cell:	embryo
22	chr3:141203940-141203990	RPTEC	kidney:	n/a
23	chr3:141203940-141203990	AG04450	lung:	fetal
24	chr3:141203940-141203990	PANC-1	pancreas:	n/a
25	chr3:141203940-141203990	ProgFib	skin:	n/a
26	chr3:141203940-141203990	SK-N-MC	brain:	n/a
27	chr3:141203940-141203990	K562	blood:	n/a
28	chr3:141203940-141203990	ovcar-3	ovarian:	n/a
29	chr3:141203940-141203990	HMEC	breast:	n/a
30	chr3:141203940-141203990	Caco-2	colon:	n/a
31	chr3:141203940-141203990	GM12878	blood:	n/a
32	chr3:141203940-141203990	HEK293	kidney:	embryo
33	chr3:141203940-141203990	SK-N-SH_RA	brain:	n/a
34	chr3:141203940-141203990	GM06990	blood:	n/a
35	chr3:141203940-141203990	HNPCEpiC	eye:	n/a
36	chr3:141203940-141203990	SAEC	small airway:	n/a
37	chr3:141203940-141203990	AG09319	gingival:	n/a
38	chr3:141203940-141203990	SKMC	muscle:	n/a
39	chr3:141203940-141203990	AG10803	skin:	n/a
40	chr3:141203940-141203990	HIPEpiC	eye:	n/a
41	chr3:141203940-141203990	LNCaP	prostate:	n/a
42	chr3:141203940-141203990	NB4	blood:	n/a
43	chr3:141203940-141203990	AG09309	skin:	n/a
44	chr3:141203940-141203990	PFSK-1	brain:	n/a
45	chr3:141203940-141203990	Hepatocyte	liver:	n/a
46	chr3:141203940-141203990	MCF10A-Er-Src	breast:	n/a
47	chr3:141203940-141203990	PrEC	prostate:	n/a
48	chr3:141203940-141203990	IMR90	lung:	fetal
49	chr3:141203940-141203990	HPAEpiC	pulmonary alveolar:	n/a
50	chr3:141203940-141203990	A549	lung:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141194536..141196661-chr3:141202566..141205649,3	K562	blood:
2	chr3:141203440..141205280-chr3:141224808..141226638,2	K562	blood:

No data

Variant related genes	Relation type
RASA2	CpG island

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1077181	0.95[AMR][1000 genomes]
rs11707656	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11708253	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709875	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711318	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11713714	0.82[EUR][1000 genomes]
rs11717144	0.82[EUR][1000 genomes]
rs11717842	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695734	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695735	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695740	0.84[EUR][1000 genomes]
rs12695741	0.84[EUR][1000 genomes]
rs13059128	0.93[AMR][1000 genomes]
rs13068454	0.84[EUR][1000 genomes]
rs13072100	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078872	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084444	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088429	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095168	0.92[EUR][1000 genomes]
rs13098300	0.90[AMR][1000 genomes]
rs13099945	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1863870	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312194	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2312266	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317570	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34342794	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3806647	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4334619	0.82[EUR][1000 genomes]
rs71619392	0.91[EUR][1000 genomes]
rs720663	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7651511	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9289634	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9808953	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9822575	0.81[EUR][1000 genomes]
rs9823528	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9829588	0.84[EUR][1000 genomes]
rs9830055	0.92[EUR][1000 genomes]
rs9833121	0.82[EUR][1000 genomes]
rs9836050	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9836818	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9837202	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838230	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9838419	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9840159	0.82[EUR][1000 genomes]
rs9840697	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9843866	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9849180	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850416	0.92[EUR][1000 genomes]
rs9865971	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9868956	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9870749	0.82[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141195400-141204200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:141196600-141204400	Weak transcription	NH-A	brain
3	chr3:141198800-141204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:141199600-141204600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:141200200-141204600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:141200200-141204600	Enhancers	HepG2	liver
7	chr3:141201200-141205400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:141201400-141204800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:141201400-141205400	Enhancers	Placenta	Placenta
10	chr3:141201800-141204000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:141201800-141204400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:141201800-141204600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:141201800-141204600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:141202000-141204200	Enhancers	Primary B cells from cord blood	blood
15	chr3:141202000-141204200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:141202200-141204600	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:141202200-141204600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:141202200-141204600	Weak transcription	NHLF	lung
19	chr3:141202400-141204200	Weak transcription	HMEC	breast
20	chr3:141202400-141204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:141202400-141204800	Weak transcription	Thymus	Thymus
22	chr3:141202600-141204200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:141202600-141204200	Weak transcription	NHEK	skin
24	chr3:141202600-141204200	Weak transcription	Osteobl	bone
25	chr3:141202600-141204400	Weak transcription	Hela-S3	cervix
26	chr3:141202800-141204000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:141202800-141204200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:141202800-141204200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:141203000-141205600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr3:141203200-141204200	Enhancers	HUVEC	blood vessel
31	chr3:141203200-141204400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:141203400-141204400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:141203400-141205600	Enhancers	Lung	lung
34	chr3:141203600-141204000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:141203600-141204400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:141203600-141204400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:141203600-141204600	Enhancers	Primary T cells from cord blood	blood
38	chr3:141203600-141204600	Enhancers	NHDF-Ad	bronchial
39	chr3:141203600-141204800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:141203800-141204200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr3:141203800-141204200	Weak transcription	A549	lung
42	chr3:141203800-141204800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr3:141203800-141205200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:141203800-141205200	Enhancers	Primary B cells from peripheral blood	blood
45	chr3:141203800-141205200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr3:141203800-141205200	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr3:141203800-141205400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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