Variant report

Variant	rs9823528
Chromosome Location	chr3:141206990-141206991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141204551..141207938-chr3:141241119..141245308,6	MCF-7	breast:
2	chr3:141189849..141195094-chr3:141204829..141208801,7	MCF-7	breast:
3	chr3:141206855..141208513-chr3:141245393..141248171,2	MCF-7	breast:
4	chr3:141206890..141209130-chr3:141222372..141224478,3	MCF-7	breast:
5	chr3:141205921..141208089-chr3:141225217..141227159,2	MCF-7	breast:
6	chr3:141205894..141211656-chr3:141222007..141226023,7	K562	blood:
7	chr3:141085737..141089975-chr3:141204779..141207356,5	K562	blood:
8	chr3:141206322..141208347-chr3:141274984..141277409,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000215606	Chromatin interaction
ENSG00000177311	Chromatin interaction
ENSG00000249417	Chromatin interaction
ENSG00000250170	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1077181	0.81[AMR][1000 genomes]
rs11557453	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11707656	0.85[EUR][1000 genomes]
rs11708253	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11709875	0.82[AMR][1000 genomes]
rs11711318	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11713714	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11714208	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11716776	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11717144	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11717842	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12695734	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12695735	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12695736	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12695740	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12695741	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12695743	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13067519	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13072100	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13078872	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13083593	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13084444	0.93[EUR][1000 genomes]
rs13088429	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13095168	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13099945	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1863870	0.83[EUR][1000 genomes]
rs2312194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34317570	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34342794	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3806647	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334619	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71619392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs720663	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7651511	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9289629	0.84[AMR][1000 genomes]
rs9289634	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808953	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822575	0.85[EUR][1000 genomes]
rs9829588	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830055	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833121	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9836050	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836818	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9837202	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9838230	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9838419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840159	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9843866	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849180	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9850416	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9865971	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9868956	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870749	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9873042	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423260	chr3:141204887-141207435	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141204200-141208000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr3:141204800-141207400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr3:141205000-141207000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:141205000-141207000	Active TSS	Fetal Kidney	kidney
5	chr3:141205000-141207400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr3:141205000-141207600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:141205200-141207000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr3:141205200-141207000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:141205200-141207000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:141205200-141207000	Active TSS	Fetal Brain Female	brain
11	chr3:141205200-141207200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr3:141205200-141207200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr3:141205200-141207200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:141205200-141207200	Active TSS	Brain Substantia Nigra	brain
15	chr3:141205200-141207400	Active TSS	H1 Cell Line	embryonic stem cell
16	chr3:141205200-141207400	Active TSS	Brain Cingulate Gyrus	brain
17	chr3:141205400-141207000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:141205400-141207000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:141205400-141207000	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr3:141205400-141207000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:141205400-141207000	Active TSS	Aorta	Aorta
22	chr3:141205400-141207000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr3:141205400-141207000	Active TSS	Esophagus	oesophagus
24	chr3:141205400-141207000	Active TSS	Gastric	stomach
25	chr3:141205400-141207000	Active TSS	Left Ventricle	heart
26	chr3:141205400-141207000	Active TSS	Ovary	ovary
27	chr3:141205400-141207000	Active TSS	Pancreas	Pancrea
28	chr3:141205400-141207000	Active TSS	Placenta Amnion	Placenta Amnion
29	chr3:141205400-141207000	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr3:141205400-141207000	Active TSS	Small Intestine	intestine
31	chr3:141205400-141207000	Active TSS	A549	lung
32	chr3:141205400-141207000	Active TSS	HMEC	breast
33	chr3:141205400-141207200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:141205400-141207200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:141205400-141207200	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr3:141205400-141207200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr3:141205400-141207200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:141205400-141207200	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr3:141205400-141207200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:141205400-141207200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:141205400-141207200	Active TSS	Brain Angular Gyrus	brain
42	chr3:141205400-141207200	Active TSS	Fetal Lung	lung
43	chr3:141205400-141207200	Active TSS	Fetal Stomach	stomach
44	chr3:141205400-141207200	Active TSS	Psoas Muscle	Psoas
45	chr3:141205400-141207200	Active TSS	NHLF	lung
46	chr3:141205400-141207400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:141205400-141207400	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr3:141205400-141207400	Active TSS	HSMMtube	muscle
49	chr3:141205400-141207600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:141205400-141207800	Active TSS	Right Ventricle	heart

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