Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25224245..25226447-chr3:25227786..25229605,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10865803	0.87[ASN][1000 genomes]
rs11129188	0.85[EUR][1000 genomes]
rs11129189	0.87[ASN][1000 genomes]
rs11710620	0.85[EUR][1000 genomes]
rs11711099	0.90[ASN][1000 genomes]
rs11711519	0.84[ASN][1000 genomes]
rs11711829	0.90[ASN][1000 genomes]
rs12491526	0.86[ASN][1000 genomes]
rs13070019	0.85[EUR][1000 genomes]
rs13092408	0.89[ASN][1000 genomes]
rs1347559	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1369873	0.92[ASN][1000 genomes]
rs1369874	0.92[ASN][1000 genomes]
rs1436236	0.92[ASN][1000 genomes]
rs1436237	0.92[ASN][1000 genomes]
rs1436238	0.87[ASN][1000 genomes]
rs2196466	0.86[ASN][1000 genomes]
rs2649618	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs321519	0.85[AFR][1000 genomes]
rs321525	0.83[AFR][1000 genomes]
rs321543	0.81[JPT][hapmap]
rs4858144	0.85[EUR][1000 genomes]
rs62228593	0.80[EUR][1000 genomes]
rs6550956	0.87[ASN][1000 genomes]
rs6788715	0.92[ASN][1000 genomes]
rs6796800	0.86[ASN][1000 genomes]
rs7623185	0.81[ASN][1000 genomes]
rs7640571	0.91[ASN][1000 genomes]
rs767823	0.85[EUR][1000 genomes]
rs931696	0.87[ASN][1000 genomes]
rs931697	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
3	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25225200-25229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:25228400-25228800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:25228400-25228800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:25228400-25228800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:25228400-25228800	Enhancers	Esophagus	oesophagus
6	chr3:25228600-25229000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:25228600-25229000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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