Variant report

Variant	rs11710620
Chromosome Location	chr3:25192012-25192013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11129188	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13067015	0.84[ASN][1000 genomes]
rs13070019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347559	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1836840	0.86[ASN][1000 genomes]
rs321543	0.85[CHD][hapmap];0.85[GIH][hapmap]
rs4681040	0.87[ASN][1000 genomes]
rs4858144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62228593	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7639228	0.85[EUR][1000 genomes]
rs767823	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25185600-25192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:25190600-25194400	Weak transcription	Fetal Heart	heart
3	chr3:25190800-25193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:25191000-25194400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:25191400-25194600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:25191400-25195200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:25191800-25192600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:25191800-25192800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:25191800-25192800	Enhancers	Right Atrium	heart
10	chr3:25191800-25193200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:25191800-25193200	Enhancers	Fetal Muscle Leg	muscle
12	chr3:25191800-25193400	Enhancers	Fetal Stomach	stomach
13	chr3:25192000-25192200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:25192000-25193800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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