Variant report

Variant	rs1836840
Chromosome Location	chr3:25191628-25191629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10865803	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11129188	0.88[ASN][1000 genomes]
rs11129189	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11710620	0.86[ASN][1000 genomes]
rs11711519	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11711829	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12491526	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12495130	0.87[EUR][1000 genomes]
rs12638845	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13067015	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13070019	0.86[ASN][1000 genomes]
rs13092408	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13093241	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1369873	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1369874	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1436236	0.87[EUR][1000 genomes]
rs1436237	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1436238	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1603980	0.83[EUR][1000 genomes]
rs1603982	0.86[EUR][1000 genomes]
rs2196466	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4681040	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858144	0.92[ASN][1000 genomes]
rs62228592	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62228593	0.83[ASN][1000 genomes]
rs6550956	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6788715	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6796800	0.86[EUR][1000 genomes]
rs7623185	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7640571	0.83[EUR][1000 genomes]
rs7645872	0.81[EUR][1000 genomes]
rs767823	0.93[ASN][1000 genomes]
rs904592	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs931696	0.87[EUR][1000 genomes]
rs931697	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25185600-25192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:25186600-25191800	Weak transcription	Fetal Stomach	stomach
3	chr3:25190000-25191800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:25190600-25192000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:25190600-25194400	Weak transcription	Fetal Heart	heart
6	chr3:25190800-25193000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:25191000-25194400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:25191400-25194600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:25191400-25195200	Weak transcription	H9 Cell Line	embryonic stem cell

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