Variant report

Variant	rs13067015
Chromosome Location	chr3:25195966-25195967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10865803	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11129188	0.82[ASN][1000 genomes]
rs11129189	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11710620	0.84[ASN][1000 genomes]
rs11711099	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11711519	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711829	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12491526	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12495130	0.90[EUR][1000 genomes]
rs12638845	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13070019	0.84[ASN][1000 genomes]
rs13092408	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13093241	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1347559	0.81[ASN][1000 genomes]
rs1369873	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1369874	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436236	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436237	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436238	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1603980	0.86[EUR][1000 genomes]
rs1603982	0.89[EUR][1000 genomes]
rs1836840	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2196466	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4681040	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858144	0.86[ASN][1000 genomes]
rs62228592	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6550956	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6788715	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796800	0.89[EUR][1000 genomes]
rs7623185	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7640571	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7645872	0.83[EUR][1000 genomes]
rs767823	0.87[ASN][1000 genomes]
rs904592	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs931696	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs931697	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25192800-25197600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:25192800-25198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:25192800-25198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:25193200-25196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:25193400-25197200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:25193400-25197200	Weak transcription	NH-A	brain
7	chr3:25193400-25197600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:25193400-25197800	Weak transcription	Fetal Stomach	stomach
9	chr3:25193400-25197800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:25193600-25197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:25193600-25197200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:25193600-25197400	Weak transcription	NHDF-Ad	bronchial
13	chr3:25193600-25197600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:25193800-25196800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:25193800-25197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:25193800-25197400	Weak transcription	Osteobl	bone
17	chr3:25194000-25197400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:25194000-25197600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:25194000-25197600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
21	chr3:25194400-25196200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:25194600-25196600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:25194600-25196800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:25194600-25197400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:25194800-25196000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:25194800-25196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:25194800-25196000	Weak transcription	Right Atrium	heart
28	chr3:25194800-25197000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:25194800-25197400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:25194800-25198200	Weak transcription	Fetal Heart	heart
31	chr3:25195000-25197400	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:25195000-25198800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:25195200-25196400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr3:25195200-25197000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr3:25195400-25196400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr3:25195400-25197600	Weak transcription	Fetal Lung	lung
37	chr3:25195400-25197600	Weak transcription	HMEC	breast
38	chr3:25195600-25196000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:25195600-25196000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:25195600-25197400	Weak transcription	HUVEC	blood vessel
41	chr3:25195600-25197600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:25195800-25197000	Enhancers	H9 Cell Line	embryonic stem cell

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