Variant report

Variant	rs7639784
Chromosome Location	chr3:133973831-133973832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13085145	1.00[ASN][1000 genomes]
rs4234421	1.00[ASN][1000 genomes]
rs71331753	1.00[ASN][1000 genomes]
rs7637889	1.00[ASN][1000 genomes]
rs7647682	1.00[ASN][1000 genomes]
rs9826364	1.00[ASN][1000 genomes]
rs9827007	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133970200-133977000	Weak transcription	Colonic Mucosa	Colon
2	chr3:133970200-133977600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:133970800-133977600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:133971000-133977800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:133971200-133974600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:133971400-133977600	Weak transcription	Osteobl	bone
7	chr3:133971400-133977800	Weak transcription	NHLF	lung
8	chr3:133971400-133979800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:133971600-133977800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:133972000-133979200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:133972200-133979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:133972400-133976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:133972400-133979800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:133973200-133979600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:133973400-133974400	Weak transcription	GM12878-XiMat	blood
16	chr3:133973400-133975400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:133973600-133977600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:133973800-133974200	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links