Variant report

Variant	rs7647682
Chromosome Location	chr3:134022215-134022216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134021508..134022342-chr8:43092931..43093434,2	MCF-7	breast:
2	chr3:134020501..134024033-chr3:134091484..134094450,3	MCF-7	breast:
3	chr3:134021979..134024054-chr3:134068045..134069765,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260633	Chromatin interaction
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10935116	1.00[CHB][hapmap]
rs11917363	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs11919447	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11923513	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11928672	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs11928742	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11928907	0.81[EUR][1000 genomes]
rs12487438	1.00[CHB][hapmap]
rs13071132	1.00[CHB][hapmap]
rs13084853	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13085145	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090504	0.81[EUR][1000 genomes]
rs13097926	0.82[EUR][1000 genomes]
rs1498730	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17312996	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17313003	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs35527623	0.81[EUR][1000 genomes]
rs35878592	0.81[EUR][1000 genomes]
rs4234421	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339087	1.00[CHB][hapmap]
rs5002434	0.81[EUR][1000 genomes]
rs5002435	0.81[EUR][1000 genomes]
rs5002436	0.81[EUR][1000 genomes]
rs5002437	0.81[EUR][1000 genomes]
rs6439474	1.00[CHB][hapmap]
rs6768709	1.00[CHB][hapmap]
rs6772791	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs6809909	1.00[CHB][hapmap]
rs71331753	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71331755	0.81[EUR][1000 genomes]
rs7636249	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[TSI][hapmap]
rs7637889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638751	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7639784	1.00[ASN][1000 genomes]
rs7647778	1.00[CHB][hapmap]
rs9826364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827007	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134015800-134026800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:134018400-134026800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:134018600-134026800	Weak transcription	A549	lung
4	chr3:134018600-134027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:134019000-134026800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:134020600-134026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:134021400-134022400	Enhancers	Fetal Lung	lung

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