Variant report

Variant	rs6439474
Chromosome Location	chr3:134000547-134000548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133969451..133970973-chr3:133998939..134001158,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11707704	1.00[ASN][1000 genomes]
rs11917363	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11919447	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11923513	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11928672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11928742	1.00[CHB][hapmap]
rs11928907	1.00[ASN][1000 genomes]
rs13069766	1.00[ASN][1000 genomes]
rs13071132	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13084853	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13090504	1.00[ASN][1000 genomes]
rs1498730	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17312996	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17313003	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34006849	1.00[ASN][1000 genomes]
rs34524468	1.00[ASN][1000 genomes]
rs34549392	1.00[ASN][1000 genomes]
rs35098409	1.00[ASN][1000 genomes]
rs35471660	1.00[ASN][1000 genomes]
rs35527623	1.00[ASN][1000 genomes]
rs35558600	1.00[ASN][1000 genomes]
rs35878592	1.00[ASN][1000 genomes]
rs3846052	1.00[ASN][1000 genomes]
rs3913262	1.00[ASN][1000 genomes]
rs4339087	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs5002434	1.00[ASN][1000 genomes]
rs5002435	1.00[ASN][1000 genomes]
rs5002436	1.00[ASN][1000 genomes]
rs5002437	1.00[ASN][1000 genomes]
rs55682444	1.00[ASN][1000 genomes]
rs56019901	1.00[ASN][1000 genomes]
rs58282329	1.00[ASN][1000 genomes]
rs59458665	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145443	1.00[ASN][1000 genomes]
rs62271221	1.00[ASN][1000 genomes]
rs6439476	1.00[ASN][1000 genomes]
rs6770237	1.00[ASN][1000 genomes]
rs6772791	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6776727	1.00[ASN][1000 genomes]
rs6804439	1.00[ASN][1000 genomes]
rs6809909	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71331755	1.00[ASN][1000 genomes]
rs72986454	1.00[ASN][1000 genomes]
rs73215399	1.00[ASN][1000 genomes]
rs7609766	1.00[ASN][1000 genomes]
rs7613323	1.00[ASN][1000 genomes]
rs7613440	1.00[ASN][1000 genomes]
rs7613450	1.00[ASN][1000 genomes]
rs7614069	1.00[ASN][1000 genomes]
rs7636249	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7637889	1.00[CHB][hapmap]
rs7638751	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7639796	1.00[ASN][1000 genomes]
rs7642519	1.00[ASN][1000 genomes]
rs7647682	1.00[CHB][hapmap]
rs7647778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7651578	1.00[ASN][1000 genomes]
rs9826364	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133998800-134001400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:133999000-134003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:133999200-134001200	Weak transcription	Fetal Heart	heart
4	chr3:133999600-134001200	Weak transcription	Placenta	Placenta
5	chr3:134000400-134001000	Enhancers	HepG2	liver
6	chr3:134000400-134001800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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