Variant report

Variant	rs61145443
Chromosome Location	chr3:133973179-133973180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133925826..133929174-chr3:133972868..133975223,3	MCF-7	breast:
2	chr3:133971742..133973681-chr3:133989273..133991521,2	MCF-7	breast:
3	chr3:133970945..133973560-chr3:133978440..133980451,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11707704	1.00[ASN][1000 genomes]
rs11917363	1.00[ASN][1000 genomes]
rs11919447	1.00[ASN][1000 genomes]
rs11923513	1.00[ASN][1000 genomes]
rs11928672	1.00[ASN][1000 genomes]
rs11928907	1.00[ASN][1000 genomes]
rs13069766	1.00[ASN][1000 genomes]
rs13071132	1.00[ASN][1000 genomes]
rs13084853	1.00[ASN][1000 genomes]
rs13090504	1.00[ASN][1000 genomes]
rs1498730	1.00[ASN][1000 genomes]
rs17312996	1.00[ASN][1000 genomes]
rs17313003	1.00[ASN][1000 genomes]
rs34006849	1.00[ASN][1000 genomes]
rs34524468	1.00[ASN][1000 genomes]
rs34549392	1.00[ASN][1000 genomes]
rs35098409	1.00[ASN][1000 genomes]
rs35471660	1.00[ASN][1000 genomes]
rs35527623	1.00[ASN][1000 genomes]
rs35558600	1.00[ASN][1000 genomes]
rs35878592	1.00[ASN][1000 genomes]
rs3846052	1.00[ASN][1000 genomes]
rs3913262	1.00[ASN][1000 genomes]
rs4339087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002434	1.00[ASN][1000 genomes]
rs5002435	1.00[ASN][1000 genomes]
rs5002436	1.00[ASN][1000 genomes]
rs5002437	1.00[ASN][1000 genomes]
rs55682444	1.00[ASN][1000 genomes]
rs56019901	1.00[ASN][1000 genomes]
rs58282329	1.00[ASN][1000 genomes]
rs59458665	1.00[ASN][1000 genomes]
rs62271221	1.00[ASN][1000 genomes]
rs6439474	1.00[ASN][1000 genomes]
rs6439476	1.00[ASN][1000 genomes]
rs6770237	1.00[ASN][1000 genomes]
rs6772791	1.00[ASN][1000 genomes]
rs6776727	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804439	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809909	1.00[ASN][1000 genomes]
rs71331755	1.00[ASN][1000 genomes]
rs72986454	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215399	1.00[ASN][1000 genomes]
rs7609766	1.00[ASN][1000 genomes]
rs7613323	1.00[ASN][1000 genomes]
rs7613440	1.00[ASN][1000 genomes]
rs7613450	1.00[ASN][1000 genomes]
rs7614069	1.00[ASN][1000 genomes]
rs7636249	1.00[ASN][1000 genomes]
rs7638751	1.00[ASN][1000 genomes]
rs7639796	1.00[ASN][1000 genomes]
rs7642519	1.00[ASN][1000 genomes]
rs7647778	1.00[ASN][1000 genomes]
rs7651578	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv1794616	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
4	esv1798974	chr3:133949713-133973731	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	esv1802675	chr3:133949713-133973731	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv1815799	chr3:133949713-133973731	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	esv1819695	chr3:133949713-133973731	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
8	esv1822126	chr3:133949713-133973731	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	esv1839030	chr3:133949713-133973731	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
10	esv1799165	chr3:133959746-133973731	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
11	esv1803106	chr3:133959746-133973731	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
12	esv1792549	chr3:133969361-133973731	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
13	esv1798144	chr3:133969361-133973731	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
14	esv1838610	chr3:133969361-133973731	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
15	esv1842254	chr3:133969361-133973731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133970200-133973200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:133970200-133977000	Weak transcription	Colonic Mucosa	Colon
3	chr3:133970200-133977600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:133970400-133973200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:133970400-133973800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:133970600-133973200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:133970800-133977600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:133971000-133973200	Enhancers	Right Atrium	heart
9	chr3:133971000-133977800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:133971200-133974600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:133971400-133973200	Enhancers	Dnd41	blood
12	chr3:133971400-133977600	Weak transcription	Osteobl	bone
13	chr3:133971400-133977800	Weak transcription	NHLF	lung
14	chr3:133971400-133979800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:133971600-133973400	Enhancers	GM12878-XiMat	blood
16	chr3:133971600-133977800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:133971800-133973400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:133972000-133973400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:133972000-133979200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:133972200-133973200	Weak transcription	Placenta	Placenta
21	chr3:133972200-133973800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:133972200-133979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:133972400-133973400	Weak transcription	Fetal Stomach	stomach
24	chr3:133972400-133976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:133972400-133979800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:133972600-133973200	Enhancers	NHDF-Ad	bronchial
27	chr3:133972600-133973400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:133972800-133973200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:133972800-133973200	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:133972800-133973600	Enhancers	Primary hematopoietic stem cells	blood
31	chr3:133973000-133973200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr3:133973000-133973200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:133973000-133973200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr3:133973000-133973200	Enhancers	Spleen	Spleen
35	chr3:133973000-133973200	Enhancers	HSMM	muscle
36	chr3:133973000-133973400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:133973000-133973600	Enhancers	Colon Smooth Muscle	Colon

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