Variant report

Variant	rs6776727
Chromosome Location	chr3:133981042-133981043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133974150..133976164-chr3:133978599..133981177,2	K562	blood:
2	chr3:133979281..133981690-chr3:134092190..134095053,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11707704	1.00[ASN][1000 genomes]
rs11917363	1.00[ASN][1000 genomes]
rs11919447	1.00[ASN][1000 genomes]
rs11923513	1.00[ASN][1000 genomes]
rs11928672	1.00[ASN][1000 genomes]
rs11928907	1.00[ASN][1000 genomes]
rs13069766	1.00[ASN][1000 genomes]
rs13071132	1.00[ASN][1000 genomes]
rs13084853	1.00[ASN][1000 genomes]
rs13090504	1.00[ASN][1000 genomes]
rs1498730	1.00[ASN][1000 genomes]
rs17312996	1.00[ASN][1000 genomes]
rs17313003	1.00[ASN][1000 genomes]
rs34006849	1.00[ASN][1000 genomes]
rs34524468	1.00[ASN][1000 genomes]
rs34549392	1.00[ASN][1000 genomes]
rs35098409	1.00[ASN][1000 genomes]
rs35471660	1.00[ASN][1000 genomes]
rs35527623	1.00[ASN][1000 genomes]
rs35558600	1.00[ASN][1000 genomes]
rs35878592	1.00[ASN][1000 genomes]
rs3846052	1.00[ASN][1000 genomes]
rs3913262	1.00[ASN][1000 genomes]
rs4339087	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5002434	1.00[ASN][1000 genomes]
rs5002435	1.00[ASN][1000 genomes]
rs5002436	1.00[ASN][1000 genomes]
rs5002437	1.00[ASN][1000 genomes]
rs55682444	1.00[ASN][1000 genomes]
rs56019901	1.00[ASN][1000 genomes]
rs58282329	1.00[ASN][1000 genomes]
rs59458665	1.00[ASN][1000 genomes]
rs61145443	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271221	1.00[ASN][1000 genomes]
rs6439474	1.00[ASN][1000 genomes]
rs6439476	1.00[ASN][1000 genomes]
rs6770237	1.00[ASN][1000 genomes]
rs6772791	1.00[ASN][1000 genomes]
rs6804439	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809909	1.00[ASN][1000 genomes]
rs71331755	1.00[ASN][1000 genomes]
rs72986454	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215399	1.00[ASN][1000 genomes]
rs7609766	1.00[ASN][1000 genomes]
rs7613323	1.00[ASN][1000 genomes]
rs7613440	1.00[ASN][1000 genomes]
rs7613450	1.00[ASN][1000 genomes]
rs7614069	1.00[ASN][1000 genomes]
rs7636249	1.00[ASN][1000 genomes]
rs7638751	1.00[ASN][1000 genomes]
rs7639796	1.00[ASN][1000 genomes]
rs7642519	1.00[ASN][1000 genomes]
rs7647778	1.00[ASN][1000 genomes]
rs7651578	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133980400-133981200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:133980400-133981200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:133980400-133985400	Weak transcription	HepG2	liver
4	chr3:133980800-133981200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:133981000-133987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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