Variant report

Variant	rs7640327
Chromosome Location	chr3:21471984-21471985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10490885	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12497792	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17008828	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17201257	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17201327	0.81[AMR][1000 genomes]
rs17273460	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17273467	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17273474	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17273481	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1909963	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs377590	0.81[ASN][1000 genomes]
rs3849538	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3860573	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3901935	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3907796	0.90[AMR][1000 genomes]
rs3913939	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3913940	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3913941	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3913942	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4045436	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4263311	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs451582	0.80[ASN][1000 genomes]
rs4858324	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4858325	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4858326	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55878001	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55941003	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56104209	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73042489	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73042502	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044405	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044408	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73044415	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044417	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044418	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044420	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044422	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044428	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73044429	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73045438	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21453200-21475600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:21458800-21483400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:21459200-21477200	Weak transcription	Fetal Lung	lung
4	chr3:21460200-21474800	Weak transcription	NHDF-Ad	bronchial
5	chr3:21463000-21491400	Weak transcription	Aorta	Aorta
6	chr3:21467800-21474600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:21469200-21475800	Weak transcription	Fetal Stomach	stomach

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