Variant report

Variant	rs7640337
Chromosome Location	chr3:105095479-105095480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105088832..105091045-chr3:105093820..105095533,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2033803	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28444183	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59857604	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6437585	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6437586	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633625	0.81[ASN][1000 genomes]
rs7650270	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7651616	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7651901	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9815659	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9846962	0.81[ASN][1000 genomes]
rs9875972	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879039	0.81[ASN][1000 genomes]
rs9879710	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105089000-105107000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:105089200-105101800	Weak transcription	NHDF-Ad	bronchial
3	chr3:105090200-105096400	Weak transcription	A549	lung
4	chr3:105090600-105101800	Weak transcription	Osteobl	bone
5	chr3:105090800-105104800	Weak transcription	NHLF	lung
6	chr3:105091000-105097600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:105091400-105105000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:105091600-105095600	Weak transcription	HUVEC	blood vessel
9	chr3:105091600-105097400	Weak transcription	Brain Anterior Caudate	brain
10	chr3:105091600-105104000	Weak transcription	NH-A	brain
11	chr3:105091800-105104600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:105091800-105104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:105092000-105097600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:105092000-105106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:105092400-105096400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:105092800-105100200	Weak transcription	NHEK	skin
17	chr3:105092800-105103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:105092800-105104200	Weak transcription	HepG2	liver
19	chr3:105092800-105105200	Weak transcription	HMEC	breast
20	chr3:105093200-105103800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:105093600-105095600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:105093600-105096200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr3:105094200-105105600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:105094400-105109000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:105094800-105095800	Enhancers	Brain Hippocampus Middle	brain
26	chr3:105095000-105095600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:105095000-105095600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:105095000-105099000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr3:105095200-105095600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:105095200-105095600	Enhancers	Brain Angular Gyrus	brain
31	chr3:105095400-105097800	Weak transcription	Brain Substantia Nigra	brain

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