Variant report

Variant	rs7633625
Chromosome Location	chr3:105069856-105069857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13317567	1.00[MEX][hapmap]
rs2033803	0.85[CHB][hapmap]
rs28444183	0.81[ASN][1000 genomes]
rs28572277	0.90[AFR][1000 genomes]
rs6437585	0.84[ASW][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs6437586	0.81[ASN][1000 genomes]
rs7618632	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs7640337	0.81[ASN][1000 genomes]
rs7651616	0.85[CHB][hapmap];0.86[YRI][hapmap]
rs7651901	0.85[CHB][hapmap];0.86[YRI][hapmap]
rs9820433	0.90[AFR][1000 genomes]
rs9852158	0.90[AFR][1000 genomes]
rs9875972	0.92[CHB][hapmap];0.82[CHD][hapmap];0.81[LWK][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs9879039	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879710	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105067600-105070000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:105068000-105072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:105068000-105072400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:105068000-105072400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:105068600-105070400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:105068600-105070400	Enhancers	HSMM	muscle
7	chr3:105068600-105070600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:105068600-105071400	Enhancers	NHDF-Ad	bronchial
9	chr3:105068600-105072400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:105068600-105072400	Enhancers	NHEK	skin
11	chr3:105068600-105074600	Enhancers	HMEC	breast
12	chr3:105068800-105070000	Weak transcription	NHLF	lung
13	chr3:105069000-105072400	Weak transcription	HSMMtube	muscle
14	chr3:105069400-105071400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:105069600-105070200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:105069800-105070000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:105069800-105072200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:105069800-105072400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:105069800-105072400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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