Variant report

Variant	rs9852158
Chromosome Location	chr3:105047285-105047286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28572277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6437585	1.00[ASW][hapmap];0.93[YRI][hapmap]
rs7618632	0.86[YRI][hapmap]
rs7633625	0.90[AFR][1000 genomes]
rs7651616	0.86[YRI][hapmap]
rs7651901	0.86[YRI][hapmap]
rs9820433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875972	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007243	chr3:104833483-105063375	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105045600-105048000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:105046200-105047400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:105046200-105047600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:105046200-105047800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:105046600-105047400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:105046600-105047600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:105046600-105047600	Enhancers	HMEC	breast
8	chr3:105046600-105047800	Enhancers	NHEK	skin
9	chr3:105047000-105047400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:105047000-105047600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:105047200-105047400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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