Variant report

Variant	rs7640665
Chromosome Location	chr3:141813172-141813173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11705932	0.83[ASN][1000 genomes]
rs1355438	0.81[EUR][1000 genomes]
rs1704985	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1705607	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1705614	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1705624	0.81[EUR][1000 genomes]
rs347685	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs347686	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs347692	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58573615	0.89[ASN][1000 genomes]
rs62284572	0.85[ASN][1000 genomes]
rs62284574	0.86[ASN][1000 genomes]
rs6773343	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6789998	0.82[ASN][1000 genomes]
rs9857917	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9865413	0.81[EUR][1000 genomes]
rs9877817	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1002123	chr3:141789746-141956778	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv536733	chr3:141789746-141956778	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1004784	chr3:141789746-142070290	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv460872	chr3:141812759-141984638	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv591911	chr3:141812759-141984638	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv591912	chr3:141812759-142071932	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
13	nsv522549	chr3:141812759-142164735	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141761800-141819600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:141763000-141820000	Weak transcription	Pancreas	Pancrea
3	chr3:141763000-141824200	Weak transcription	Aorta	Aorta
4	chr3:141764000-141825600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:141765000-141818800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:141795400-141835800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:141797600-141819600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:141797600-141823600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:141799600-141814600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:141803600-141814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:141804000-141819200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:141804000-141820800	Weak transcription	Left Ventricle	heart
13	chr3:141806200-141818600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:141807000-141817600	Weak transcription	Fetal Intestine Large	intestine
15	chr3:141807200-141817800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:141809000-141814200	Genic enhancers	Fetal Thymus	thymus
17	chr3:141809600-141814400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:141810800-141816200	Weak transcription	Thymus	Thymus
19	chr3:141811400-141816200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:141811600-141817400	Enhancers	Dnd41	blood

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