Variant report

Variant	rs347692
Chromosome Location	chr3:141785395-141785396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10935453	0.81[ASN][1000 genomes]
rs11705932	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1355438	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1397764	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1511299	0.82[EUR][1000 genomes]
rs1704985	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1705607	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1705614	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1705624	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1912719	0.90[ASN][1000 genomes]
rs2861422	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2862125	0.82[ASN][1000 genomes]
rs34186890	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs347679	0.83[ASN][1000 genomes]
rs347685	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs347686	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs347687	0.90[ASN][1000 genomes]
rs4683658	0.87[EUR][1000 genomes]
rs57156169	0.81[AFR][1000 genomes]
rs58573615	0.96[ASN][1000 genomes]
rs62284572	0.85[ASN][1000 genomes]
rs62284574	0.87[ASN][1000 genomes]
rs6440057	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6440060	0.92[EUR][1000 genomes]
rs6773343	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6789998	0.82[ASN][1000 genomes]
rs6791514	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73232681	0.89[ASN][1000 genomes]
rs7630893	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7635444	0.89[ASN][1000 genomes]
rs7640665	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7644155	0.87[EUR][1000 genomes]
rs7644383	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9848817	0.83[ASN][1000 genomes]
rs9857917	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9865413	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9877817	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877555	chr3:141740076-141791408	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141760600-141800800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:141761000-141807800	Weak transcription	Fetal Lung	lung
3	chr3:141761800-141819600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:141763000-141820000	Weak transcription	Pancreas	Pancrea
5	chr3:141763000-141824200	Weak transcription	Aorta	Aorta
6	chr3:141764000-141825600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:141765000-141818800	Weak transcription	Primary B cells from cord blood	blood
8	chr3:141767000-141798000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:141767600-141807200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:141769600-141790200	Strong transcription	Fetal Thymus	thymus
11	chr3:141770400-141795800	Weak transcription	Fetal Stomach	stomach
12	chr3:141771000-141789200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:141774400-141798800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:141776000-141805400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:141776400-141795800	Weak transcription	Ovary	ovary
16	chr3:141780600-141787200	Weak transcription	Fetal Intestine Small	intestine
17	chr3:141780600-141791400	Weak transcription	Thymus	Thymus
18	chr3:141780600-141796400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:141780800-141796400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:141781800-141790400	Weak transcription	Dnd41	blood
21	chr3:141782800-141785400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:141783000-141785600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:141783000-141785800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:141783000-141786000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr3:141783000-141795800	Weak transcription	Psoas Muscle	Psoas
26	chr3:141783800-141785400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:141783800-141790600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr3:141784000-141785800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr3:141784000-141796000	Weak transcription	Lung	lung
30	chr3:141784200-141785400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:141784600-141796000	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:141784800-141785400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:141784800-141785600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr3:141784800-141785600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr3:141785000-141790000	Weak transcription	Small Intestine	intestine
36	chr3:141785200-141785400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr3:141785200-141785400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr3:141785200-141785600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr3:141785200-141785800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:141785200-141796600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links