Variant report

Variant	rs7641797
Chromosome Location	chr3:157829909-157829910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157828488..157831199-chr3:157883217..157885486,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16828806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025925	1.00[AMR][1000 genomes]
rs7613737	1.00[AMR][1000 genomes]
rs9869501	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157828400-157830600	Flanking Active TSS	Dnd41	blood
2	chr3:157828600-157830000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:157828600-157830000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:157828600-157830000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:157828600-157830000	Enhancers	Small Intestine	intestine
6	chr3:157828600-157845800	Weak transcription	Spleen	Spleen
7	chr3:157828600-157847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:157828600-157857000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:157828800-157830000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:157828800-157830000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:157828800-157830000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:157828800-157830000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:157828800-157830200	Enhancers	Primary T cells from cord blood	blood
14	chr3:157828800-157830200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:157828800-157830200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:157828800-157831000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:157828800-157831200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:157828800-157839600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:157828800-157840800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:157828800-157841200	Weak transcription	Left Ventricle	heart
21	chr3:157828800-157847600	Weak transcription	NH-A	brain
22	chr3:157828800-157851000	Weak transcription	Right Ventricle	heart
23	chr3:157829000-157830000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:157829000-157830000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:157829000-157830000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:157829000-157830000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:157829000-157830000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:157829000-157830400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:157829000-157840600	Weak transcription	Fetal Kidney	kidney
30	chr3:157829000-157840800	Weak transcription	Adipose Nuclei	Adipose
31	chr3:157829000-157841000	Weak transcription	Fetal Intestine Large	intestine
32	chr3:157829000-157841200	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:157829000-157841400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:157829000-157849400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr3:157829200-157830000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr3:157829200-157830000	Enhancers	Hela-S3	cervix
37	chr3:157829200-157830000	Enhancers	NHDF-Ad	bronchial
38	chr3:157829200-157830200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:157829200-157830200	Enhancers	HepG2	liver
40	chr3:157829200-157830400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:157829200-157830800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:157829200-157839600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:157829200-157840000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:157829200-157840600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:157829200-157840800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:157829200-157841200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:157829200-157841200	Weak transcription	Fetal Thymus	thymus
48	chr3:157829200-157841400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:157829200-157841800	Weak transcription	Brain Substantia Nigra	brain
50	chr3:157829200-157842000	Weak transcription	Psoas Muscle	Psoas

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